Results 81 - 100 of 191 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
6377 | 5' | -53.5 | NC_001847.1 | + | 124386 | 0.68 | 0.883754 |
Target: 5'- -cGCGCGCGCAgCUCug--CCAGa-- -3' miRNA: 3'- gaCGCGCGCGUgGAGuaaaGGUUgag -5' |
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6377 | 5' | -53.5 | NC_001847.1 | + | 129273 | 0.68 | 0.883754 |
Target: 5'- cCUGCGCGCaGCgcuggaccACCUCGagggCCAggcgGCUCg -3' miRNA: 3'- -GACGCGCG-CG--------UGGAGUaaa-GGU----UGAG- -5' |
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6377 | 5' | -53.5 | NC_001847.1 | + | 106300 | 0.68 | 0.890838 |
Target: 5'- -cGCGCGCGCGgCCgcgCG-UUCUAGCa- -3' miRNA: 3'- gaCGCGCGCGU-GGa--GUaAAGGUUGag -5' |
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6377 | 5' | -53.5 | NC_001847.1 | + | 109625 | 0.68 | 0.897679 |
Target: 5'- gUGCGCGCcaaccGCGCCuUCGUggaggUCUcGCUCc -3' miRNA: 3'- gACGCGCG-----CGUGG-AGUAa----AGGuUGAG- -5' |
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6377 | 5' | -53.5 | NC_001847.1 | + | 41849 | 0.68 | 0.897679 |
Target: 5'- -cGCGCGCGCGgCCUgCGcgccgCCGACaUCg -3' miRNA: 3'- gaCGCGCGCGU-GGA-GUaaa--GGUUG-AG- -5' |
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6377 | 5' | -53.5 | NC_001847.1 | + | 63227 | 0.68 | 0.897679 |
Target: 5'- -cGUGCGCGCGCCgcgcgcCGggUCCGccGCUg -3' miRNA: 3'- gaCGCGCGCGUGGa-----GUaaAGGU--UGAg -5' |
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6377 | 5' | -53.5 | NC_001847.1 | + | 99022 | 0.68 | 0.883754 |
Target: 5'- -gGCGCGCGCGgCUUCGUggaaggcgcCCAGCg- -3' miRNA: 3'- gaCGCGCGCGU-GGAGUAaa-------GGUUGag -5' |
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6377 | 5' | -53.5 | NC_001847.1 | + | 101596 | 0.68 | 0.883033 |
Target: 5'- -cGCGUGCGCcucgacucaACCUCcgcguccGUcUCCGGCUCc -3' miRNA: 3'- gaCGCGCGCG---------UGGAG-------UAaAGGUUGAG- -5' |
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6377 | 5' | -53.5 | NC_001847.1 | + | 65699 | 0.68 | 0.876431 |
Target: 5'- -cGCGCGCGCGCCgccg-UCCGcCa- -3' miRNA: 3'- gaCGCGCGCGUGGaguaaAGGUuGag -5' |
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6377 | 5' | -53.5 | NC_001847.1 | + | 28511 | 0.68 | 0.861089 |
Target: 5'- -aGCGCGCGCGCUUUuug-CCGuggcGCUUg -3' miRNA: 3'- gaCGCGCGCGUGGAGuaaaGGU----UGAG- -5' |
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6377 | 5' | -53.5 | NC_001847.1 | + | 104132 | 0.68 | 0.897679 |
Target: 5'- -cGCGCGCGCGCCggCAacgCCGgACa- -3' miRNA: 3'- gaCGCGCGCGUGGa-GUaaaGGU-UGag -5' |
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6377 | 5' | -53.5 | NC_001847.1 | + | 89178 | 0.68 | 0.868874 |
Target: 5'- -cGaCGCGCGCGCCUUuucgCCGAUg- -3' miRNA: 3'- gaC-GCGCGCGUGGAGuaaaGGUUGag -5' |
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6377 | 5' | -53.5 | NC_001847.1 | + | 62000 | 0.68 | 0.861089 |
Target: 5'- -gGCGCGC-CGCCUCc--UCCAGgUCc -3' miRNA: 3'- gaCGCGCGcGUGGAGuaaAGGUUgAG- -5' |
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6377 | 5' | -53.5 | NC_001847.1 | + | 102259 | 0.68 | 0.861089 |
Target: 5'- -cGCgGCGCGCACCgugcccUCCAGCg- -3' miRNA: 3'- gaCG-CGCGCGUGGaguaa-AGGUUGag -5' |
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6377 | 5' | -53.5 | NC_001847.1 | + | 109951 | 0.68 | 0.861089 |
Target: 5'- -cGCGCGCGgGgCUCGcuggCCAGCUg -3' miRNA: 3'- gaCGCGCGCgUgGAGUaaa-GGUUGAg -5' |
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6377 | 5' | -53.5 | NC_001847.1 | + | 60811 | 0.68 | 0.868874 |
Target: 5'- -aGCGCGCGCGCCUgCGg---CAGCg- -3' miRNA: 3'- gaCGCGCGCGUGGA-GUaaagGUUGag -5' |
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6377 | 5' | -53.5 | NC_001847.1 | + | 131418 | 0.68 | 0.868874 |
Target: 5'- -cGCGUGCGCGCCgugg--CCGGCg- -3' miRNA: 3'- gaCGCGCGCGUGGaguaaaGGUUGag -5' |
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6377 | 5' | -53.5 | NC_001847.1 | + | 99600 | 0.68 | 0.868874 |
Target: 5'- -cGCGCGC-CGCCUCGgcagCCAcgacCUCg -3' miRNA: 3'- gaCGCGCGcGUGGAGUaaa-GGUu---GAG- -5' |
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6377 | 5' | -53.5 | NC_001847.1 | + | 58078 | 0.68 | 0.876431 |
Target: 5'- -cGCGCGCGCGCCgcagCGggugCCGcgccGCUa -3' miRNA: 3'- gaCGCGCGCGUGGa---GUaaa-GGU----UGAg -5' |
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6377 | 5' | -53.5 | NC_001847.1 | + | 56284 | 0.68 | 0.883754 |
Target: 5'- -aGgGCGCGCACCgcgagCAca-CCAGCUa -3' miRNA: 3'- gaCgCGCGCGUGGa----GUaaaGGUUGAg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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