Results 101 - 120 of 191 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
6377 | 5' | -53.5 | NC_001847.1 | + | 60811 | 0.68 | 0.868874 |
Target: 5'- -aGCGCGCGCGCCUgCGg---CAGCg- -3' miRNA: 3'- gaCGCGCGCGUGGA-GUaaagGUUGag -5' |
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6377 | 5' | -53.5 | NC_001847.1 | + | 109951 | 0.68 | 0.861089 |
Target: 5'- -cGCGCGCGgGgCUCGcuggCCAGCUg -3' miRNA: 3'- gaCGCGCGCgUgGAGUaaa-GGUUGAg -5' |
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6377 | 5' | -53.5 | NC_001847.1 | + | 41849 | 0.68 | 0.897679 |
Target: 5'- -cGCGCGCGCGgCCUgCGcgccgCCGACaUCg -3' miRNA: 3'- gaCGCGCGCGU-GGA-GUaaa--GGUUG-AG- -5' |
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6377 | 5' | -53.5 | NC_001847.1 | + | 63227 | 0.68 | 0.897679 |
Target: 5'- -cGUGCGCGCGCCgcgcgcCGggUCCGccGCUg -3' miRNA: 3'- gaCGCGCGCGUGGa-----GUaaAGGU--UGAg -5' |
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6377 | 5' | -53.5 | NC_001847.1 | + | 100383 | 0.68 | 0.897679 |
Target: 5'- -cGCgGCGCGCAgCCgcg---CCAGCUCg -3' miRNA: 3'- gaCG-CGCGCGU-GGaguaaaGGUUGAG- -5' |
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6377 | 5' | -53.5 | NC_001847.1 | + | 104132 | 0.68 | 0.897679 |
Target: 5'- -cGCGCGCGCGCCggCAacgCCGgACa- -3' miRNA: 3'- gaCGCGCGCGUGGa-GUaaaGGU-UGag -5' |
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6377 | 5' | -53.5 | NC_001847.1 | + | 122926 | 0.68 | 0.883754 |
Target: 5'- gUGUGCGCGCGCCgcgCAag-CCAGaagCg -3' miRNA: 3'- gACGCGCGCGUGGa--GUaaaGGUUga-G- -5' |
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6377 | 5' | -53.5 | NC_001847.1 | + | 58022 | 0.67 | 0.910615 |
Target: 5'- -cGCGCGCGCGCCUugaagCAgccCCGccGCUa -3' miRNA: 3'- gaCGCGCGCGUGGA-----GUaaaGGU--UGAg -5' |
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6377 | 5' | -53.5 | NC_001847.1 | + | 127089 | 0.67 | 0.910615 |
Target: 5'- uCUGCGCGCGgGCCgcgCGgcuuugggUCCAccggGCUg -3' miRNA: 3'- -GACGCGCGCgUGGa--GUaa------AGGU----UGAg -5' |
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6377 | 5' | -53.5 | NC_001847.1 | + | 40948 | 0.67 | 0.910615 |
Target: 5'- -cGCGCGCaGCGCCUCGaacugCCcGCg- -3' miRNA: 3'- gaCGCGCG-CGUGGAGUaaa--GGuUGag -5' |
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6377 | 5' | -53.5 | NC_001847.1 | + | 114875 | 0.67 | 0.910615 |
Target: 5'- -cGCGCgGCGCcgACCUCGccgUCUcGCUCu -3' miRNA: 3'- gaCGCG-CGCG--UGGAGUaa-AGGuUGAG- -5' |
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6377 | 5' | -53.5 | NC_001847.1 | + | 99783 | 0.67 | 0.904272 |
Target: 5'- gCUGCGCcaGCGCGCUcggaUCAgagCCucGCUCg -3' miRNA: 3'- -GACGCG--CGCGUGG----AGUaaaGGu-UGAG- -5' |
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6377 | 5' | -53.5 | NC_001847.1 | + | 74842 | 0.67 | 0.916704 |
Target: 5'- -cGCGCGCGCGCCgcccg-CCGccccGCUg -3' miRNA: 3'- gaCGCGCGCGUGGaguaaaGGU----UGAg -5' |
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6377 | 5' | -53.5 | NC_001847.1 | + | 82571 | 0.67 | 0.916704 |
Target: 5'- -gGC-CGC-CGCCUCGagcUCCAGCUCu -3' miRNA: 3'- gaCGcGCGcGUGGAGUaa-AGGUUGAG- -5' |
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6377 | 5' | -53.5 | NC_001847.1 | + | 56729 | 0.67 | 0.910615 |
Target: 5'- -aGCGCGCGCGCCagCAgcgcgCCcGCa- -3' miRNA: 3'- gaCGCGCGCGUGGa-GUaaa--GGuUGag -5' |
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6377 | 5' | -53.5 | NC_001847.1 | + | 96554 | 0.67 | 0.922538 |
Target: 5'- -cGCGCGCGCucaacgccaggaGCCUCcgcggcUCCGGCa- -3' miRNA: 3'- gaCGCGCGCG------------UGGAGuaa---AGGUUGag -5' |
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6377 | 5' | -53.5 | NC_001847.1 | + | 90451 | 0.67 | 0.928116 |
Target: 5'- -aGCGCGCGguCCgcgCGgcccaUCCGcgGCUCg -3' miRNA: 3'- gaCGCGCGCguGGa--GUaa---AGGU--UGAG- -5' |
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6377 | 5' | -53.5 | NC_001847.1 | + | 12323 | 0.67 | 0.928116 |
Target: 5'- -gGUGgGCGCGCC-Cg---CCGGCUCg -3' miRNA: 3'- gaCGCgCGCGUGGaGuaaaGGUUGAG- -5' |
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6377 | 5' | -53.5 | NC_001847.1 | + | 80868 | 0.67 | 0.928116 |
Target: 5'- -cGCGCGgaugaGCGCCUCGag-CC-GCUCg -3' miRNA: 3'- gaCGCGCg----CGUGGAGUaaaGGuUGAG- -5' |
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6377 | 5' | -53.5 | NC_001847.1 | + | 38620 | 0.67 | 0.904272 |
Target: 5'- -gGCGCGCGCGgUcCGUUgccgCCcACUCg -3' miRNA: 3'- gaCGCGCGCGUgGaGUAAa---GGuUGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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