miRNA display CGI


Results 121 - 140 of 191 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6377 5' -53.5 NC_001847.1 + 82571 0.67 0.916704
Target:  5'- -gGC-CGC-CGCCUCGagcUCCAGCUCu -3'
miRNA:   3'- gaCGcGCGcGUGGAGUaa-AGGUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 114875 0.67 0.910615
Target:  5'- -cGCGCgGCGCcgACCUCGccgUCUcGCUCu -3'
miRNA:   3'- gaCGCG-CGCG--UGGAGUaa-AGGuUGAG- -5'
6377 5' -53.5 NC_001847.1 + 40948 0.67 0.910615
Target:  5'- -cGCGCGCaGCGCCUCGaacugCCcGCg- -3'
miRNA:   3'- gaCGCGCG-CGUGGAGUaaa--GGuUGag -5'
6377 5' -53.5 NC_001847.1 + 127089 0.67 0.910615
Target:  5'- uCUGCGCGCGgGCCgcgCGgcuuugggUCCAccggGCUg -3'
miRNA:   3'- -GACGCGCGCgUGGa--GUaa------AGGU----UGAg -5'
6377 5' -53.5 NC_001847.1 + 58022 0.67 0.910615
Target:  5'- -cGCGCGCGCGCCUugaagCAgccCCGccGCUa -3'
miRNA:   3'- gaCGCGCGCGUGGA-----GUaaaGGU--UGAg -5'
6377 5' -53.5 NC_001847.1 + 56729 0.67 0.910615
Target:  5'- -aGCGCGCGCGCCagCAgcgcgCCcGCa- -3'
miRNA:   3'- gaCGCGCGCGUGGa-GUaaa--GGuUGag -5'
6377 5' -53.5 NC_001847.1 + 99783 0.67 0.904272
Target:  5'- gCUGCGCcaGCGCGCUcggaUCAgagCCucGCUCg -3'
miRNA:   3'- -GACGCG--CGCGUGG----AGUaaaGGu-UGAG- -5'
6377 5' -53.5 NC_001847.1 + 38620 0.67 0.904272
Target:  5'- -gGCGCGCGCGgUcCGUUgccgCCcACUCg -3'
miRNA:   3'- gaCGCGCGCGUgGaGUAAa---GGuUGAG- -5'
6377 5' -53.5 NC_001847.1 + 90451 0.67 0.928116
Target:  5'- -aGCGCGCGguCCgcgCGgcccaUCCGcgGCUCg -3'
miRNA:   3'- gaCGCGCGCguGGa--GUaa---AGGU--UGAG- -5'
6377 5' -53.5 NC_001847.1 + 12323 0.67 0.928116
Target:  5'- -gGUGgGCGCGCC-Cg---CCGGCUCg -3'
miRNA:   3'- gaCGCgCGCGUGGaGuaaaGGUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 5675 0.67 0.916704
Target:  5'- -cGuCGCGCGCGgCggCGgccgCCAGCUCa -3'
miRNA:   3'- gaC-GCGCGCGUgGa-GUaaa-GGUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 65615 0.67 0.922538
Target:  5'- -cGCGCGUGCugCUCGgcgCagGGCUUg -3'
miRNA:   3'- gaCGCGCGCGugGAGUaaaGg-UUGAG- -5'
6377 5' -53.5 NC_001847.1 + 93205 0.67 0.922538
Target:  5'- uCUGCaGCGUGCGCCUCcagGUaUCgAACa- -3'
miRNA:   3'- -GACG-CGCGCGUGGAG---UAaAGgUUGag -5'
6377 5' -53.5 NC_001847.1 + 99460 0.67 0.928116
Target:  5'- uUGCGCaGCGCGCCgcUCGgggCCAAgaUCa -3'
miRNA:   3'- gACGCG-CGCGUGG--AGUaaaGGUUg-AG- -5'
6377 5' -53.5 NC_001847.1 + 80868 0.67 0.928116
Target:  5'- -cGCGCGgaugaGCGCCUCGag-CC-GCUCg -3'
miRNA:   3'- gaCGCGCg----CGUGGAGUaaaGGuUGAG- -5'
6377 5' -53.5 NC_001847.1 + 43271 0.66 0.933439
Target:  5'- gCUGCGCGUccgGCGCUUCGgcUUCCugaUCg -3'
miRNA:   3'- -GACGCGCG---CGUGGAGUa-AAGGuugAG- -5'
6377 5' -53.5 NC_001847.1 + 118688 0.66 0.932918
Target:  5'- uCUGCGcCGCGgGCCUCGUcguaguuUUCguAgUCg -3'
miRNA:   3'- -GACGC-GCGCgUGGAGUA-------AAGguUgAG- -5'
6377 5' -53.5 NC_001847.1 + 70132 0.66 0.952187
Target:  5'- aUGCGCauGCGCGCCa----UCCAgcaGCUCg -3'
miRNA:   3'- gACGCG--CGCGUGGaguaaAGGU---UGAG- -5'
6377 5' -53.5 NC_001847.1 + 1585 0.66 0.943317
Target:  5'- -cGCGCcaGCGCGCCgcUCGgg-CCAGCg- -3'
miRNA:   3'- gaCGCG--CGCGUGG--AGUaaaGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 104239 0.66 0.943317
Target:  5'- -cGCcgGCGCGCGCCUCAc--CgGGCUg -3'
miRNA:   3'- gaCG--CGCGCGUGGAGUaaaGgUUGAg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.