Results 41 - 60 of 191 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6377 | 5' | -53.5 | NC_001847.1 | + | 23107 | 0.7 | 0.781993 |
Target: 5'- -cGCGCGCGcCACCgcgUCGUUUCUAAa-- -3' miRNA: 3'- gaCGCGCGC-GUGG---AGUAAAGGUUgag -5' |
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6377 | 5' | -53.5 | NC_001847.1 | + | 60851 | 0.7 | 0.781993 |
Target: 5'- gCUGCGCG-GCGCCagGgcgUCCAGCg- -3' miRNA: 3'- -GACGCGCgCGUGGagUaa-AGGUUGag -5' |
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6377 | 5' | -53.5 | NC_001847.1 | + | 2853 | 0.7 | 0.781993 |
Target: 5'- -aGCGCGCGCGCCagcgccCAgg-CCGACg- -3' miRNA: 3'- gaCGCGCGCGUGGa-----GUaaaGGUUGag -5' |
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6377 | 5' | -53.5 | NC_001847.1 | + | 105666 | 0.7 | 0.781993 |
Target: 5'- -aGCGCGCGCGCCagcgccCAgg-CCGACg- -3' miRNA: 3'- gaCGCGCGCGUGGa-----GUaaaGGUUGag -5' |
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6377 | 5' | -53.5 | NC_001847.1 | + | 90312 | 0.7 | 0.800819 |
Target: 5'- -aGCGCGacCGCGCC-CAUUgCCGACUg -3' miRNA: 3'- gaCGCGC--GCGUGGaGUAAaGGUUGAg -5' |
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6377 | 5' | -53.5 | NC_001847.1 | + | 129103 | 0.7 | 0.800819 |
Target: 5'- gUGCGCGCGCAgUUUAacgUCCAaaGCUa -3' miRNA: 3'- gACGCGCGCGUgGAGUaa-AGGU--UGAg -5' |
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6377 | 5' | -53.5 | NC_001847.1 | + | 67300 | 0.7 | 0.809991 |
Target: 5'- -aGCGCGCGCGCCagcg--CCGGCa- -3' miRNA: 3'- gaCGCGCGCGUGGaguaaaGGUUGag -5' |
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6377 | 5' | -53.5 | NC_001847.1 | + | 120741 | 0.7 | 0.809991 |
Target: 5'- gCUGCGaGCgGgGCCUCGcg-CCAGCUCg -3' miRNA: 3'- -GACGCgCG-CgUGGAGUaaaGGUUGAG- -5' |
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6377 | 5' | -53.5 | NC_001847.1 | + | 38033 | 0.7 | 0.809991 |
Target: 5'- gUGgGCGCGCGCCgccgcgCCGccGCUCg -3' miRNA: 3'- gACgCGCGCGUGGaguaaaGGU--UGAG- -5' |
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6377 | 5' | -53.5 | NC_001847.1 | + | 41568 | 0.7 | 0.809991 |
Target: 5'- -aGCGCgucguguccgaGCGCGCCUUAaacuuggCCGGCUCg -3' miRNA: 3'- gaCGCG-----------CGCGUGGAGUaaa----GGUUGAG- -5' |
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6377 | 5' | -53.5 | NC_001847.1 | + | 81702 | 0.7 | 0.809991 |
Target: 5'- gCUGCGCGCGCugCggCAcgcgcgcgCCGACg- -3' miRNA: 3'- -GACGCGCGCGugGa-GUaaa-----GGUUGag -5' |
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6377 | 5' | -53.5 | NC_001847.1 | + | 99661 | 0.69 | 0.81899 |
Target: 5'- -cGCGCGCGcCGCCUUug--CCGcCUCu -3' miRNA: 3'- gaCGCGCGC-GUGGAGuaaaGGUuGAG- -5' |
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6377 | 5' | -53.5 | NC_001847.1 | + | 76222 | 0.69 | 0.81899 |
Target: 5'- -aGCGCGCGUgccgACCUCGUc-CCGACcCg -3' miRNA: 3'- gaCGCGCGCG----UGGAGUAaaGGUUGaG- -5' |
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6377 | 5' | -53.5 | NC_001847.1 | + | 99170 | 0.69 | 0.81899 |
Target: 5'- gCUGCGCGCGCcuuggcgcCCUCGUggUCCucGCg- -3' miRNA: 3'- -GACGCGCGCGu-------GGAGUAa-AGGu-UGag -5' |
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6377 | 5' | -53.5 | NC_001847.1 | + | 15049 | 0.69 | 0.81899 |
Target: 5'- -cGCGCGgGCGCUUUAUcUCCcgccccgcgcGGCUCg -3' miRNA: 3'- gaCGCGCgCGUGGAGUAaAGG----------UUGAG- -5' |
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6377 | 5' | -53.5 | NC_001847.1 | + | 57452 | 0.69 | 0.825182 |
Target: 5'- -cGCGCGCGCACgccgccuugaagcgCUCGg--CCAGCa- -3' miRNA: 3'- gaCGCGCGCGUG--------------GAGUaaaGGUUGag -5' |
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6377 | 5' | -53.5 | NC_001847.1 | + | 6123 | 0.69 | 0.826934 |
Target: 5'- -gGCGCGaGCGCCUCGccgCCAucgggggGCUCg -3' miRNA: 3'- gaCGCGCgCGUGGAGUaaaGGU-------UGAG- -5' |
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6377 | 5' | -53.5 | NC_001847.1 | + | 66122 | 0.69 | 0.827808 |
Target: 5'- -aGCGCGaCGCACCgCAg---CAGCUCa -3' miRNA: 3'- gaCGCGC-GCGUGGaGUaaagGUUGAG- -5' |
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6377 | 5' | -53.5 | NC_001847.1 | + | 130338 | 0.69 | 0.827808 |
Target: 5'- -gGCauCGCGCGCCUCG--UCCAGCa- -3' miRNA: 3'- gaCGc-GCGCGUGGAGUaaAGGUUGag -5' |
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6377 | 5' | -53.5 | NC_001847.1 | + | 84552 | 0.69 | 0.827808 |
Target: 5'- -gGgGCGUGCGCCUCGUacacggCCucCUCg -3' miRNA: 3'- gaCgCGCGCGUGGAGUAaa----GGuuGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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