miRNA display CGI


Results 81 - 100 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6377 5' -53.5 NC_001847.1 + 131418 0.68 0.868874
Target:  5'- -cGCGUGCGCGCCgugg--CCGGCg- -3'
miRNA:   3'- gaCGCGCGCGUGGaguaaaGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 60811 0.68 0.868874
Target:  5'- -aGCGCGCGCGCCUgCGg---CAGCg- -3'
miRNA:   3'- gaCGCGCGCGUGGA-GUaaagGUUGag -5'
6377 5' -53.5 NC_001847.1 + 99600 0.68 0.868874
Target:  5'- -cGCGCGC-CGCCUCGgcagCCAcgacCUCg -3'
miRNA:   3'- gaCGCGCGcGUGGAGUaaa-GGUu---GAG- -5'
6377 5' -53.5 NC_001847.1 + 69110 0.68 0.876431
Target:  5'- -cGUGCGCGUauACCUCcuccaggUCCAGCg- -3'
miRNA:   3'- gaCGCGCGCG--UGGAGuaa----AGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 65699 0.68 0.876431
Target:  5'- -cGCGCGCGCGCCgccg-UCCGcCa- -3'
miRNA:   3'- gaCGCGCGCGUGGaguaaAGGUuGag -5'
6377 5' -53.5 NC_001847.1 + 58078 0.68 0.876431
Target:  5'- -cGCGCGCGCGCCgcagCGggugCCGcgccGCUa -3'
miRNA:   3'- gaCGCGCGCGUGGa---GUaaa-GGU----UGAg -5'
6377 5' -53.5 NC_001847.1 + 41290 0.68 0.876431
Target:  5'- -aGCGCGCcggcguaguGCGCgaCGUUUCCGGCg- -3'
miRNA:   3'- gaCGCGCG---------CGUGgaGUAAAGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 84189 0.68 0.882308
Target:  5'- -gGCGuCGUGCGCCagCAgccgcugcuggUCCAGCUCc -3'
miRNA:   3'- gaCGC-GCGCGUGGa-GUaa---------AGGUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 101596 0.68 0.883033
Target:  5'- -cGCGUGCGCcucgacucaACCUCcgcguccGUcUCCGGCUCc -3'
miRNA:   3'- gaCGCGCGCG---------UGGAG-------UAaAGGUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 56284 0.68 0.883754
Target:  5'- -aGgGCGCGCACCgcgagCAca-CCAGCUa -3'
miRNA:   3'- gaCgCGCGCGUGGa----GUaaaGGUUGAg -5'
6377 5' -53.5 NC_001847.1 + 47027 0.68 0.883754
Target:  5'- -gGCGCGCGaCACCgugaUUCCGGC-Ca -3'
miRNA:   3'- gaCGCGCGC-GUGGaguaAAGGUUGaG- -5'
6377 5' -53.5 NC_001847.1 + 77082 0.68 0.883754
Target:  5'- -cGCGCGCGCGCCaaUCGgcggCCcGCg- -3'
miRNA:   3'- gaCGCGCGCGUGG--AGUaaa-GGuUGag -5'
6377 5' -53.5 NC_001847.1 + 97847 0.68 0.883754
Target:  5'- -gGCuGCGCGCGCCUUAUa--CAauGCUCc -3'
miRNA:   3'- gaCG-CGCGCGUGGAGUAaagGU--UGAG- -5'
6377 5' -53.5 NC_001847.1 + 122926 0.68 0.883754
Target:  5'- gUGUGCGCGCGCCgcgCAag-CCAGaagCg -3'
miRNA:   3'- gACGCGCGCGUGGa--GUaaaGGUUga-G- -5'
6377 5' -53.5 NC_001847.1 + 124386 0.68 0.883754
Target:  5'- -cGCGCGCGCAgCUCug--CCAGa-- -3'
miRNA:   3'- gaCGCGCGCGUgGAGuaaaGGUUgag -5'
6377 5' -53.5 NC_001847.1 + 129273 0.68 0.883754
Target:  5'- cCUGCGCGCaGCgcuggaccACCUCGagggCCAggcgGCUCg -3'
miRNA:   3'- -GACGCGCG-CG--------UGGAGUaaa-GGU----UGAG- -5'
6377 5' -53.5 NC_001847.1 + 99022 0.68 0.883754
Target:  5'- -gGCGCGCGCGgCUUCGUggaaggcgcCCAGCg- -3'
miRNA:   3'- gaCGCGCGCGU-GGAGUAaa-------GGUUGag -5'
6377 5' -53.5 NC_001847.1 + 108376 0.68 0.883754
Target:  5'- -gGCGCGCGCACUgacCAgg-CCGcgcacccgcGCUCu -3'
miRNA:   3'- gaCGCGCGCGUGGa--GUaaaGGU---------UGAG- -5'
6377 5' -53.5 NC_001847.1 + 51317 0.68 0.890838
Target:  5'- gCUGCgGCG-GCGCUUCAUggaCCuGCUCa -3'
miRNA:   3'- -GACG-CGCgCGUGGAGUAaa-GGuUGAG- -5'
6377 5' -53.5 NC_001847.1 + 106300 0.68 0.890838
Target:  5'- -cGCGCGCGCGgCCgcgCG-UUCUAGCa- -3'
miRNA:   3'- gaCGCGCGCGU-GGa--GUaAAGGUUGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.