miRNA display CGI


Results 81 - 100 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6377 5' -53.5 NC_001847.1 + 99220 0.67 0.904272
Target:  5'- -aGCGCGCGCgACCgcCGgugCCAugccGCUCg -3'
miRNA:   3'- gaCGCGCGCG-UGGa-GUaaaGGU----UGAG- -5'
6377 5' -53.5 NC_001847.1 + 99783 0.67 0.904272
Target:  5'- gCUGCGCcaGCGCGCUcggaUCAgagCCucGCUCg -3'
miRNA:   3'- -GACGCG--CGCGUGG----AGUaaaGGu-UGAG- -5'
6377 5' -53.5 NC_001847.1 + 38620 0.67 0.904272
Target:  5'- -gGCGCGCGCGgUcCGUUgccgCCcACUCg -3'
miRNA:   3'- gaCGCGCGCGUgGaGUAAa---GGuUGAG- -5'
6377 5' -53.5 NC_001847.1 + 87470 0.67 0.904272
Target:  5'- -gGCGCGCGCccGCUUCGUaaacuuggCCGuGCUCg -3'
miRNA:   3'- gaCGCGCGCG--UGGAGUAaa------GGU-UGAG- -5'
6377 5' -53.5 NC_001847.1 + 104132 0.68 0.897679
Target:  5'- -cGCGCGCGCGCCggCAacgCCGgACa- -3'
miRNA:   3'- gaCGCGCGCGUGGa-GUaaaGGU-UGag -5'
6377 5' -53.5 NC_001847.1 + 100383 0.68 0.897679
Target:  5'- -cGCgGCGCGCAgCCgcg---CCAGCUCg -3'
miRNA:   3'- gaCG-CGCGCGU-GGaguaaaGGUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 63227 0.68 0.897679
Target:  5'- -cGUGCGCGCGCCgcgcgcCGggUCCGccGCUg -3'
miRNA:   3'- gaCGCGCGCGUGGa-----GUaaAGGU--UGAg -5'
6377 5' -53.5 NC_001847.1 + 41849 0.68 0.897679
Target:  5'- -cGCGCGCGCGgCCUgCGcgccgCCGACaUCg -3'
miRNA:   3'- gaCGCGCGCGU-GGA-GUaaa--GGUUG-AG- -5'
6377 5' -53.5 NC_001847.1 + 109625 0.68 0.897679
Target:  5'- gUGCGCGCcaaccGCGCCuUCGUggaggUCUcGCUCc -3'
miRNA:   3'- gACGCGCG-----CGUGG-AGUAa----AGGuUGAG- -5'
6377 5' -53.5 NC_001847.1 + 140 0.68 0.890838
Target:  5'- aUGUGCGCGgcCAUCUUGcUUCCAaACUCa -3'
miRNA:   3'- gACGCGCGC--GUGGAGUaAAGGU-UGAG- -5'
6377 5' -53.5 NC_001847.1 + 106300 0.68 0.890838
Target:  5'- -cGCGCGCGCGgCCgcgCG-UUCUAGCa- -3'
miRNA:   3'- gaCGCGCGCGU-GGa--GUaAAGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 19686 0.68 0.890838
Target:  5'- -cGgGUGCGCGCCgUCGguuugaaugCCGGCUCc -3'
miRNA:   3'- gaCgCGCGCGUGG-AGUaaa------GGUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 51317 0.68 0.890838
Target:  5'- gCUGCgGCG-GCGCUUCAUggaCCuGCUCa -3'
miRNA:   3'- -GACG-CGCgCGUGGAGUAaa-GGuUGAG- -5'
6377 5' -53.5 NC_001847.1 + 97847 0.68 0.883754
Target:  5'- -gGCuGCGCGCGCCUUAUa--CAauGCUCc -3'
miRNA:   3'- gaCG-CGCGCGUGGAGUAaagGU--UGAG- -5'
6377 5' -53.5 NC_001847.1 + 56284 0.68 0.883754
Target:  5'- -aGgGCGCGCACCgcgagCAca-CCAGCUa -3'
miRNA:   3'- gaCgCGCGCGUGGa----GUaaaGGUUGAg -5'
6377 5' -53.5 NC_001847.1 + 122926 0.68 0.883754
Target:  5'- gUGUGCGCGCGCCgcgCAag-CCAGaagCg -3'
miRNA:   3'- gACGCGCGCGUGGa--GUaaaGGUUga-G- -5'
6377 5' -53.5 NC_001847.1 + 129273 0.68 0.883754
Target:  5'- cCUGCGCGCaGCgcuggaccACCUCGagggCCAggcgGCUCg -3'
miRNA:   3'- -GACGCGCG-CG--------UGGAGUaaa-GGU----UGAG- -5'
6377 5' -53.5 NC_001847.1 + 124386 0.68 0.883754
Target:  5'- -cGCGCGCGCAgCUCug--CCAGa-- -3'
miRNA:   3'- gaCGCGCGCGUgGAGuaaaGGUUgag -5'
6377 5' -53.5 NC_001847.1 + 108376 0.68 0.883754
Target:  5'- -gGCGCGCGCACUgacCAgg-CCGcgcacccgcGCUCu -3'
miRNA:   3'- gaCGCGCGCGUGGa--GUaaaGGU---------UGAG- -5'
6377 5' -53.5 NC_001847.1 + 99022 0.68 0.883754
Target:  5'- -gGCGCGCGCGgCUUCGUggaaggcgcCCAGCg- -3'
miRNA:   3'- gaCGCGCGCGU-GGAGUAaa-------GGUUGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.