miRNA display CGI


Results 41 - 60 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6377 5' -53.5 NC_001847.1 + 41849 0.68 0.897679
Target:  5'- -cGCGCGCGCGgCCUgCGcgccgCCGACaUCg -3'
miRNA:   3'- gaCGCGCGCGU-GGA-GUaaa--GGUUG-AG- -5'
6377 5' -53.5 NC_001847.1 + 43196 0.78 0.373559
Target:  5'- -aGUGCGCGCGCCUCGUggauuGCUCg -3'
miRNA:   3'- gaCGCGCGCGUGGAGUAaagguUGAG- -5'
6377 5' -53.5 NC_001847.1 + 43271 0.66 0.933439
Target:  5'- gCUGCGCGUccgGCGCUUCGgcUUCCugaUCg -3'
miRNA:   3'- -GACGCGCG---CGUGGAGUa-AAGGuugAG- -5'
6377 5' -53.5 NC_001847.1 + 43524 0.7 0.772359
Target:  5'- -gGCGCGCGCGggcuuCCUCGcggCCAACa- -3'
miRNA:   3'- gaCGCGCGCGU-----GGAGUaaaGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 43722 0.66 0.952187
Target:  5'- gCUGCGCGCggacguggugGCGCaCUCug--CCAACa- -3'
miRNA:   3'- -GACGCGCG----------CGUG-GAGuaaaGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 46447 0.66 0.952187
Target:  5'- uCUGCGCGCGCAgCgccg--CCAgggcACUUa -3'
miRNA:   3'- -GACGCGCGCGUgGaguaaaGGU----UGAG- -5'
6377 5' -53.5 NC_001847.1 + 46459 0.69 0.836435
Target:  5'- aUGCGCGCGCggaugGCCUugcgCAUggCCAGC-Ca -3'
miRNA:   3'- gACGCGCGCG-----UGGA----GUAaaGGUUGaG- -5'
6377 5' -53.5 NC_001847.1 + 46908 0.71 0.722382
Target:  5'- -cGCGcCGCGCcgGCCUCGgcUCCGGCg- -3'
miRNA:   3'- gaCGC-GCGCG--UGGAGUaaAGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 47027 0.68 0.883754
Target:  5'- -gGCGCGCGaCACCgugaUUCCGGC-Ca -3'
miRNA:   3'- gaCGCGCGC-GUGGaguaAAGGUUGaG- -5'
6377 5' -53.5 NC_001847.1 + 47885 0.66 0.947877
Target:  5'- -cGCGCGCGCGCCcgCGcg-CCGGggCg -3'
miRNA:   3'- gaCGCGCGCGUGGa-GUaaaGGUUgaG- -5'
6377 5' -53.5 NC_001847.1 + 51209 0.66 0.947877
Target:  5'- --cCGCGCGCACUUCGagcgggCCcuGCUCg -3'
miRNA:   3'- gacGCGCGCGUGGAGUaaa---GGu-UGAG- -5'
6377 5' -53.5 NC_001847.1 + 51317 0.68 0.890838
Target:  5'- gCUGCgGCG-GCGCUUCAUggaCCuGCUCa -3'
miRNA:   3'- -GACG-CGCgCGUGGAGUAaa-GGuUGAG- -5'
6377 5' -53.5 NC_001847.1 + 51549 0.75 0.493425
Target:  5'- gCUGCGCGCGCGCg-CGUgcUCgGGCUCg -3'
miRNA:   3'- -GACGCGCGCGUGgaGUAa-AGgUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 52069 0.66 0.943317
Target:  5'- gUGgGCGgGCACCUUcgccgCCAGCa- -3'
miRNA:   3'- gACgCGCgCGUGGAGuaaa-GGUUGag -5'
6377 5' -53.5 NC_001847.1 + 53029 0.69 0.836435
Target:  5'- gCUGCGCGCucGgGCCUCGgcUCCGAg-- -3'
miRNA:   3'- -GACGCGCG--CgUGGAGUaaAGGUUgag -5'
6377 5' -53.5 NC_001847.1 + 53271 0.67 0.910615
Target:  5'- -gGCGCuGCGCGCC-CAggcgcgcgUCCGcCUCa -3'
miRNA:   3'- gaCGCG-CGCGUGGaGUaa------AGGUuGAG- -5'
6377 5' -53.5 NC_001847.1 + 53447 0.66 0.933439
Target:  5'- -gGCGCGCGCGCCUgGcgcUCUAcgGCg- -3'
miRNA:   3'- gaCGCGCGCGUGGAgUaa-AGGU--UGag -5'
6377 5' -53.5 NC_001847.1 + 55659 0.71 0.742694
Target:  5'- -aGaCGUGCGCGCCgcgc-UCCGGCUCg -3'
miRNA:   3'- gaC-GCGCGCGUGGaguaaAGGUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 56284 0.68 0.883754
Target:  5'- -aGgGCGCGCACCgcgagCAca-CCAGCUa -3'
miRNA:   3'- gaCgCGCGCGUGGa----GUaaaGGUUGAg -5'
6377 5' -53.5 NC_001847.1 + 56729 0.67 0.910615
Target:  5'- -aGCGCGCGCGCCagCAgcgcgCCcGCa- -3'
miRNA:   3'- gaCGCGCGCGUGGa-GUaaa--GGuUGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.