miRNA display CGI


Results 61 - 80 of 191 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6377 5' -53.5 NC_001847.1 + 57452 0.69 0.825182
Target:  5'- -cGCGCGCGCACgccgccuugaagcgCUCGg--CCAGCa- -3'
miRNA:   3'- gaCGCGCGCGUG--------------GAGUaaaGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 58022 0.67 0.910615
Target:  5'- -cGCGCGCGCGCCUugaagCAgccCCGccGCUa -3'
miRNA:   3'- gaCGCGCGCGUGGA-----GUaaaGGU--UGAg -5'
6377 5' -53.5 NC_001847.1 + 58078 0.68 0.876431
Target:  5'- -cGCGCGCGCGCCgcagCGggugCCGcgccGCUa -3'
miRNA:   3'- gaCGCGCGCGUGGa---GUaaa-GGU----UGAg -5'
6377 5' -53.5 NC_001847.1 + 59913 0.66 0.943317
Target:  5'- -cGCGCGCGCGCggCGagagCCGGCg- -3'
miRNA:   3'- gaCGCGCGCGUGgaGUaaa-GGUUGag -5'
6377 5' -53.5 NC_001847.1 + 60317 0.69 0.844862
Target:  5'- -aGCGCGCGCGCCa-----CCuGCUCg -3'
miRNA:   3'- gaCGCGCGCGUGGaguaaaGGuUGAG- -5'
6377 5' -53.5 NC_001847.1 + 60741 0.69 0.836435
Target:  5'- -gGCGCGgGCGCggCGcgguggcgguUUUCCAGCUCc -3'
miRNA:   3'- gaCGCGCgCGUGgaGU----------AAAGGUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 60811 0.68 0.868874
Target:  5'- -aGCGCGCGCGCCUgCGg---CAGCg- -3'
miRNA:   3'- gaCGCGCGCGUGGA-GUaaagGUUGag -5'
6377 5' -53.5 NC_001847.1 + 60851 0.7 0.781993
Target:  5'- gCUGCGCG-GCGCCagGgcgUCCAGCg- -3'
miRNA:   3'- -GACGCGCgCGUGGagUaa-AGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 61201 0.76 0.464092
Target:  5'- uUGCGCGCGCGCCagGUacgcgCCGGCUg -3'
miRNA:   3'- gACGCGCGCGUGGagUAaa---GGUUGAg -5'
6377 5' -53.5 NC_001847.1 + 62000 0.68 0.861089
Target:  5'- -gGCGCGC-CGCCUCc--UCCAGgUCc -3'
miRNA:   3'- gaCGCGCGcGUGGAGuaaAGGUUgAG- -5'
6377 5' -53.5 NC_001847.1 + 62146 0.67 0.928116
Target:  5'- -cGCGCcCGCGCUgCGg--CCAGCUCc -3'
miRNA:   3'- gaCGCGcGCGUGGaGUaaaGGUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 62628 0.66 0.947877
Target:  5'- -cGCGCGCGCGCgaauggggcguaCUCGgcgagcCCGGCUa -3'
miRNA:   3'- gaCGCGCGCGUG------------GAGUaaa---GGUUGAg -5'
6377 5' -53.5 NC_001847.1 + 63227 0.68 0.897679
Target:  5'- -cGUGCGCGCGCCgcgcgcCGggUCCGccGCUg -3'
miRNA:   3'- gaCGCGCGCGUGGa-----GUaaAGGU--UGAg -5'
6377 5' -53.5 NC_001847.1 + 65615 0.67 0.922538
Target:  5'- -cGCGCGUGCugCUCGgcgCagGGCUUg -3'
miRNA:   3'- gaCGCGCGCGugGAGUaaaGg-UUGAG- -5'
6377 5' -53.5 NC_001847.1 + 65659 0.66 0.952187
Target:  5'- -cGCGUGCGCGCCcgcacCAUcgCgCAGCUg -3'
miRNA:   3'- gaCGCGCGCGUGGa----GUAaaG-GUUGAg -5'
6377 5' -53.5 NC_001847.1 + 65699 0.68 0.876431
Target:  5'- -cGCGCGCGCGCCgccg-UCCGcCa- -3'
miRNA:   3'- gaCGCGCGCGUGGaguaaAGGUuGag -5'
6377 5' -53.5 NC_001847.1 + 66122 0.69 0.827808
Target:  5'- -aGCGCGaCGCACCgCAg---CAGCUCa -3'
miRNA:   3'- gaCGCGC-GCGUGGaGUaaagGUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 66478 0.67 0.928116
Target:  5'- uUGUGCGCgGCACgUCGUgcgugucggCCAGCg- -3'
miRNA:   3'- gACGCGCG-CGUGgAGUAaa-------GGUUGag -5'
6377 5' -53.5 NC_001847.1 + 67300 0.7 0.809991
Target:  5'- -aGCGCGCGCGCCagcg--CCGGCa- -3'
miRNA:   3'- gaCGCGCGCGUGGaguaaaGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 67413 0.66 0.943317
Target:  5'- -gGCGCGUGUGCCgagaggCCAgGCUCa -3'
miRNA:   3'- gaCGCGCGCGUGGaguaaaGGU-UGAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.