miRNA display CGI


Results 81 - 100 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6377 5' -53.5 NC_001847.1 + 68943 0.65 0.955458
Target:  5'- -cGCGgGCuGCGCCUCcagccaggcgUCCAGCg- -3'
miRNA:   3'- gaCGCgCG-CGUGGAGuaa-------AGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 69110 0.68 0.876431
Target:  5'- -cGUGCGCGUauACCUCcuccaggUCCAGCg- -3'
miRNA:   3'- gaCGCGCGCG--UGGAGuaa----AGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 69753 0.72 0.670325
Target:  5'- cCUGCcaccGCGCGCugUUCAgcuuUUUCCAGCa- -3'
miRNA:   3'- -GACG----CGCGCGugGAGU----AAAGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 69897 0.66 0.947877
Target:  5'- gUGCGUGUGCACCaaGUUcCCGgaGCUg -3'
miRNA:   3'- gACGCGCGCGUGGagUAAaGGU--UGAg -5'
6377 5' -53.5 NC_001847.1 + 70132 0.66 0.952187
Target:  5'- aUGCGCauGCGCGCCa----UCCAgcaGCUCg -3'
miRNA:   3'- gACGCG--CGCGUGGaguaaAGGU---UGAG- -5'
6377 5' -53.5 NC_001847.1 + 71709 0.66 0.938505
Target:  5'- uCUGCGCgGUGCGCCggcccgCCGGCg- -3'
miRNA:   3'- -GACGCG-CGCGUGGaguaaaGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 72079 0.76 0.445051
Target:  5'- gCUGCGCcCGCGCCUCGc--CCAGCUUu -3'
miRNA:   3'- -GACGCGcGCGUGGAGUaaaGGUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 72960 0.67 0.928116
Target:  5'- -cGCGCGCGUggACCUCGgcgUgGGCUa -3'
miRNA:   3'- gaCGCGCGCG--UGGAGUaaaGgUUGAg -5'
6377 5' -53.5 NC_001847.1 + 73583 0.66 0.952187
Target:  5'- uCUGCaccuCGCGCACCgugcCGUUgCCGgcgGCUCg -3'
miRNA:   3'- -GACGc---GCGCGUGGa---GUAAaGGU---UGAG- -5'
6377 5' -53.5 NC_001847.1 + 74842 0.67 0.916704
Target:  5'- -cGCGCGCGCGCCgcccg-CCGccccGCUg -3'
miRNA:   3'- gaCGCGCGCGUGGaguaaaGGU----UGAg -5'
6377 5' -53.5 NC_001847.1 + 75214 0.66 0.938505
Target:  5'- uUGCGUgGCGC-CCUUccg-CCGGCUCu -3'
miRNA:   3'- gACGCG-CGCGuGGAGuaaaGGUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 75245 0.71 0.723406
Target:  5'- -cGCGCGCGCGCCgcccuccucgCCAACg- -3'
miRNA:   3'- gaCGCGCGCGUGGaguaaa----GGUUGag -5'
6377 5' -53.5 NC_001847.1 + 75661 0.69 0.844862
Target:  5'- -cGCGgGCGUugCUCGUgaaggCCGGgUCg -3'
miRNA:   3'- gaCGCgCGCGugGAGUAaa---GGUUgAG- -5'
6377 5' -53.5 NC_001847.1 + 76222 0.69 0.81899
Target:  5'- -aGCGCGCGUgccgACCUCGUc-CCGACcCg -3'
miRNA:   3'- gaCGCGCGCG----UGGAGUAaaGGUUGaG- -5'
6377 5' -53.5 NC_001847.1 + 77082 0.68 0.883754
Target:  5'- -cGCGCGCGCGCCaaUCGgcggCCcGCg- -3'
miRNA:   3'- gaCGCGCGCGUGG--AGUaaa-GGuUGag -5'
6377 5' -53.5 NC_001847.1 + 78137 0.66 0.943317
Target:  5'- -cGgGCGCGCGCCggcc-UgCGGCUCa -3'
miRNA:   3'- gaCgCGCGCGUGGaguaaAgGUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 78321 0.76 0.464092
Target:  5'- -gGCGCGCGCGCCgCGggcCCGGCUUg -3'
miRNA:   3'- gaCGCGCGCGUGGaGUaaaGGUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 78449 0.66 0.952187
Target:  5'- gCUGgGCuGCcuGCACCUCGUgcgcaCgGACUCg -3'
miRNA:   3'- -GACgCG-CG--CGUGGAGUAaa---GgUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 78656 0.71 0.722382
Target:  5'- -gGuCGCGCGCGCCUgCGUcgCCGGCg- -3'
miRNA:   3'- gaC-GCGCGCGUGGA-GUAaaGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 80868 0.67 0.928116
Target:  5'- -cGCGCGgaugaGCGCCUCGag-CC-GCUCg -3'
miRNA:   3'- gaCGCGCg----CGUGGAGUaaaGGuUGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.