miRNA display CGI


Results 101 - 120 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6377 5' -53.5 NC_001847.1 + 81702 0.7 0.809991
Target:  5'- gCUGCGCGCGCugCggCAcgcgcgcgCCGACg- -3'
miRNA:   3'- -GACGCGCGCGugGa-GUaaa-----GGUUGag -5'
6377 5' -53.5 NC_001847.1 + 81710 0.66 0.938998
Target:  5'- -gGCGCGCGCGCCgguggaagcggcacgCGcccUCCAGCc- -3'
miRNA:   3'- gaCGCGCGCGUGGa--------------GUaa-AGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 82571 0.67 0.916704
Target:  5'- -gGC-CGC-CGCCUCGagcUCCAGCUCu -3'
miRNA:   3'- gaCGcGCGcGUGGAGUaa-AGGUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 82882 0.66 0.943317
Target:  5'- gUGCGgGCGCGCCgCAg--CCAAg-- -3'
miRNA:   3'- gACGCgCGCGUGGaGUaaaGGUUgag -5'
6377 5' -53.5 NC_001847.1 + 83604 0.71 0.7527
Target:  5'- -cGCGCGCGCGCg-CAgccUCCGACa- -3'
miRNA:   3'- gaCGCGCGCGUGgaGUaa-AGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 84189 0.68 0.882308
Target:  5'- -gGCGuCGUGCGCCagCAgccgcugcuggUCCAGCUCc -3'
miRNA:   3'- gaCGC-GCGCGUGGa-GUaa---------AGGUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 84552 0.69 0.827808
Target:  5'- -gGgGCGUGCGCCUCGUacacggCCucCUCg -3'
miRNA:   3'- gaCgCGCGCGUGGAGUAaa----GGuuGAG- -5'
6377 5' -53.5 NC_001847.1 + 85196 0.67 0.916704
Target:  5'- gUGCGCggcaccGCGCGCCaCGgcgUCCAACg- -3'
miRNA:   3'- gACGCG------CGCGUGGaGUaa-AGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 87096 0.66 0.933439
Target:  5'- -gGCGCGCGCGgaCUCgcgcuGUUUCCGcGCUUc -3'
miRNA:   3'- gaCGCGCGCGUg-GAG-----UAAAGGU-UGAG- -5'
6377 5' -53.5 NC_001847.1 + 87470 0.67 0.904272
Target:  5'- -gGCGCGCGCccGCUUCGUaaacuuggCCGuGCUCg -3'
miRNA:   3'- gaCGCGCGCG--UGGAGUAaa------GGU-UGAG- -5'
6377 5' -53.5 NC_001847.1 + 88473 0.71 0.7527
Target:  5'- -cGCGCGUGCugCUCGc--CCuACUCu -3'
miRNA:   3'- gaCGCGCGCGugGAGUaaaGGuUGAG- -5'
6377 5' -53.5 NC_001847.1 + 88627 0.69 0.836435
Target:  5'- gUGCGCGCGCACgUgCGcgagagCCuGCUCa -3'
miRNA:   3'- gACGCGCGCGUGgA-GUaaa---GGuUGAG- -5'
6377 5' -53.5 NC_001847.1 + 88922 0.66 0.933439
Target:  5'- -cGCGCGCGCGgCUCugcgCCAuGCg- -3'
miRNA:   3'- gaCGCGCGCGUgGAGuaaaGGU-UGag -5'
6377 5' -53.5 NC_001847.1 + 89136 0.67 0.910615
Target:  5'- -cGUGCGCGCG-CUCGUgcccgUCAACUUu -3'
miRNA:   3'- gaCGCGCGCGUgGAGUAaa---GGUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 89178 0.68 0.868874
Target:  5'- -cGaCGCGCGCGCCUUuucgCCGAUg- -3'
miRNA:   3'- gaC-GCGCGCGUGGAGuaaaGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 90312 0.7 0.800819
Target:  5'- -aGCGCGacCGCGCC-CAUUgCCGACUg -3'
miRNA:   3'- gaCGCGC--GCGUGGaGUAAaGGUUGAg -5'
6377 5' -53.5 NC_001847.1 + 90451 0.67 0.928116
Target:  5'- -aGCGCGCGguCCgcgCGgcccaUCCGcgGCUCg -3'
miRNA:   3'- gaCGCGCGCguGGa--GUaa---AGGU--UGAG- -5'
6377 5' -53.5 NC_001847.1 + 91164 0.74 0.585759
Target:  5'- -gGCcaCGCGCGCCUUAUauagaUCCAGCUCg -3'
miRNA:   3'- gaCGc-GCGCGUGGAGUAa----AGGUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 91960 0.83 0.188456
Target:  5'- -gGCGCGCGCA-CUC-UUUCCAACUCa -3'
miRNA:   3'- gaCGCGCGCGUgGAGuAAAGGUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 92234 0.66 0.938505
Target:  5'- -aGCGCGCGC-UCUCGag-CCGccugcaGCUCg -3'
miRNA:   3'- gaCGCGCGCGuGGAGUaaaGGU------UGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.