miRNA display CGI


Results 21 - 40 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6377 5' -53.5 NC_001847.1 + 115883 0.66 0.947877
Target:  5'- gCUGCGCcgccggcuCGCGCCgcuuggCCGGCUCg -3'
miRNA:   3'- -GACGCGc-------GCGUGGaguaaaGGUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 115471 0.66 0.943317
Target:  5'- ---gGCGCGCACCcggucgcaGUUUCCGGCg- -3'
miRNA:   3'- gacgCGCGCGUGGag------UAAAGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 114875 0.67 0.910615
Target:  5'- -cGCGCgGCGCcgACCUCGccgUCUcGCUCu -3'
miRNA:   3'- gaCGCG-CGCG--UGGAGUaa-AGGuUGAG- -5'
6377 5' -53.5 NC_001847.1 + 112885 0.73 0.637552
Target:  5'- gCUGCGC-CGCGCgCUCGUcggcuucUUCCuGCUCg -3'
miRNA:   3'- -GACGCGcGCGUG-GAGUA-------AAGGuUGAG- -5'
6377 5' -53.5 NC_001847.1 + 111270 0.69 0.848176
Target:  5'- aUGCGCGCGCugCgaaagCAcUUuacgcgcgaggccagCCGGCUCg -3'
miRNA:   3'- gACGCGCGCGugGa----GUaAA---------------GGUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 110389 0.8 0.268393
Target:  5'- -cGCGCGuCGCACCUCAg--CCGGCUg -3'
miRNA:   3'- gaCGCGC-GCGUGGAGUaaaGGUUGAg -5'
6377 5' -53.5 NC_001847.1 + 109951 0.68 0.861089
Target:  5'- -cGCGCGCGgGgCUCGcuggCCAGCUg -3'
miRNA:   3'- gaCGCGCGCgUgGAGUaaa-GGUUGAg -5'
6377 5' -53.5 NC_001847.1 + 109690 0.69 0.853083
Target:  5'- cCUGCGCGCGCucgGCCUgCAg--UCGGCg- -3'
miRNA:   3'- -GACGCGCGCG---UGGA-GUaaaGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 109625 0.68 0.897679
Target:  5'- gUGCGCGCcaaccGCGCCuUCGUggaggUCUcGCUCc -3'
miRNA:   3'- gACGCGCG-----CGUGG-AGUAa----AGGuUGAG- -5'
6377 5' -53.5 NC_001847.1 + 108376 0.68 0.883754
Target:  5'- -gGCGCGCGCACUgacCAgg-CCGcgcacccgcGCUCu -3'
miRNA:   3'- gaCGCGCGCGUGGa--GUaaaGGU---------UGAG- -5'
6377 5' -53.5 NC_001847.1 + 108177 1.09 0.003917
Target:  5'- gCUGCGCGCGCACCUCAUUUCCAACUCc -3'
miRNA:   3'- -GACGCGCGCGUGGAGUAAAGGUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 107867 0.69 0.836435
Target:  5'- -cGCccgGCGgGCAgCCUCAcaUCCGGCUCu -3'
miRNA:   3'- gaCG---CGCgCGU-GGAGUaaAGGUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 107456 0.73 0.606848
Target:  5'- -gGCGCucGCGCGCCUCAgc-CCGACg- -3'
miRNA:   3'- gaCGCG--CGCGUGGAGUaaaGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 107200 0.69 0.844862
Target:  5'- -aGCGCGCGCGCCgCGgc-CCAggcGCUg -3'
miRNA:   3'- gaCGCGCGCGUGGaGUaaaGGU---UGAg -5'
6377 5' -53.5 NC_001847.1 + 106704 0.66 0.952187
Target:  5'- -cGCGCG-GCGCCgcggCGUagCCAGCg- -3'
miRNA:   3'- gaCGCGCgCGUGGa---GUAaaGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 106586 0.66 0.943317
Target:  5'- -gGCGC-CGUGuCCUCGUcgUCUGGCUCg -3'
miRNA:   3'- gaCGCGcGCGU-GGAGUAa-AGGUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 106300 0.68 0.890838
Target:  5'- -cGCGCGCGCGgCCgcgCG-UUCUAGCa- -3'
miRNA:   3'- gaCGCGCGCGU-GGa--GUaAAGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 105666 0.7 0.781993
Target:  5'- -aGCGCGCGCGCCagcgccCAgg-CCGACg- -3'
miRNA:   3'- gaCGCGCGCGUGGa-----GUaaaGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 104948 0.71 0.7527
Target:  5'- -gGCGCGCGCGCCgcgcaccgCGUcggCCAGgUCc -3'
miRNA:   3'- gaCGCGCGCGUGGa-------GUAaa-GGUUgAG- -5'
6377 5' -53.5 NC_001847.1 + 104624 0.75 0.533789
Target:  5'- cCUGCGCGCcgaGCGCgCUCAcgUCCGGCg- -3'
miRNA:   3'- -GACGCGCG---CGUG-GAGUaaAGGUUGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.