miRNA display CGI


Results 41 - 60 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6377 5' -53.5 NC_001847.1 + 104398 0.66 0.943317
Target:  5'- -cGCGCcaGCGCGCCgcUCGgg-CCAGCg- -3'
miRNA:   3'- gaCGCG--CGCGUGG--AGUaaaGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 104239 0.66 0.943317
Target:  5'- -cGCcgGCGCGCGCCUCAc--CgGGCUg -3'
miRNA:   3'- gaCG--CGCGCGUGGAGUaaaGgUUGAg -5'
6377 5' -53.5 NC_001847.1 + 104132 0.68 0.897679
Target:  5'- -cGCGCGCGCGCCggCAacgCCGgACa- -3'
miRNA:   3'- gaCGCGCGCGUGGa-GUaaaGGU-UGag -5'
6377 5' -53.5 NC_001847.1 + 103594 0.66 0.947877
Target:  5'- -gGCG-GCGCcgGCCUCGUcgucgUCCGACg- -3'
miRNA:   3'- gaCGCgCGCG--UGGAGUAa----AGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 102769 0.66 0.952187
Target:  5'- -cGUGCGCGCGCCguucugCAccaaaaggCCAGCa- -3'
miRNA:   3'- gaCGCGCGCGUGGa-----GUaaa-----GGUUGag -5'
6377 5' -53.5 NC_001847.1 + 102612 0.75 0.533789
Target:  5'- gCUGCGCGCGCAUCgcc--UCCGACa- -3'
miRNA:   3'- -GACGCGCGCGUGGaguaaAGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 102493 0.71 0.762591
Target:  5'- -gGCGcCGUcCACCUCGcccUCCAGCUCg -3'
miRNA:   3'- gaCGC-GCGcGUGGAGUaa-AGGUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 102259 0.68 0.861089
Target:  5'- -cGCgGCGCGCACCgugcccUCCAGCg- -3'
miRNA:   3'- gaCG-CGCGCGUGGaguaa-AGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 102087 0.75 0.499394
Target:  5'- aCUGC-CGCaGCGCCUCGgccgcgagcgcgUCCAGCUCg -3'
miRNA:   3'- -GACGcGCG-CGUGGAGUaa----------AGGUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 101596 0.68 0.883033
Target:  5'- -cGCGUGCGCcucgacucaACCUCcgcguccGUcUCCGGCUCc -3'
miRNA:   3'- gaCGCGCGCG---------UGGAG-------UAaAGGUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 101505 0.77 0.408329
Target:  5'- -cGCGCGCGCGCCUCGcggUCAGC-Cg -3'
miRNA:   3'- gaCGCGCGCGUGGAGUaaaGGUUGaG- -5'
6377 5' -53.5 NC_001847.1 + 100964 0.73 0.638612
Target:  5'- gUGCGCGCccccggcccgcaGCGCCUCAg--CCGcCUCg -3'
miRNA:   3'- gACGCGCG------------CGUGGAGUaaaGGUuGAG- -5'
6377 5' -53.5 NC_001847.1 + 100446 0.66 0.933439
Target:  5'- -cGCgGCGCGCAaguCCUCGcg-CCAgcGCUCc -3'
miRNA:   3'- gaCG-CGCGCGU---GGAGUaaaGGU--UGAG- -5'
6377 5' -53.5 NC_001847.1 + 100383 0.68 0.897679
Target:  5'- -cGCgGCGCGCAgCCgcg---CCAGCUCg -3'
miRNA:   3'- gaCG-CGCGCGU-GGaguaaaGGUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 100310 0.66 0.933439
Target:  5'- gCUGCGCGCuCGCCUCcagcgCCcGgUCg -3'
miRNA:   3'- -GACGCGCGcGUGGAGuaaa-GGuUgAG- -5'
6377 5' -53.5 NC_001847.1 + 99783 0.67 0.904272
Target:  5'- gCUGCGCcaGCGCGCUcggaUCAgagCCucGCUCg -3'
miRNA:   3'- -GACGCG--CGCGUGG----AGUaaaGGu-UGAG- -5'
6377 5' -53.5 NC_001847.1 + 99661 0.69 0.81899
Target:  5'- -cGCGCGCGcCGCCUUug--CCGcCUCu -3'
miRNA:   3'- gaCGCGCGC-GUGGAGuaaaGGUuGAG- -5'
6377 5' -53.5 NC_001847.1 + 99600 0.68 0.868874
Target:  5'- -cGCGCGC-CGCCUCGgcagCCAcgacCUCg -3'
miRNA:   3'- gaCGCGCGcGUGGAGUaaa-GGUu---GAG- -5'
6377 5' -53.5 NC_001847.1 + 99460 0.67 0.928116
Target:  5'- uUGCGCaGCGCGCCgcUCGgggCCAAgaUCa -3'
miRNA:   3'- gACGCG-CGCGUGG--AGUaaaGGUUg-AG- -5'
6377 5' -53.5 NC_001847.1 + 99220 0.67 0.904272
Target:  5'- -aGCGCGCGCgACCgcCGgugCCAugccGCUCg -3'
miRNA:   3'- gaCGCGCGCG-UGGa-GUaaaGGU----UGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.