miRNA display CGI


Results 61 - 80 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6377 5' -53.5 NC_001847.1 + 99170 0.69 0.81899
Target:  5'- gCUGCGCGCGCcuuggcgcCCUCGUggUCCucGCg- -3'
miRNA:   3'- -GACGCGCGCGu-------GGAGUAa-AGGu-UGag -5'
6377 5' -53.5 NC_001847.1 + 99146 0.72 0.659774
Target:  5'- uCUGCGCuauccGCGCGCCUUGUggcgCCAGC-Cg -3'
miRNA:   3'- -GACGCG-----CGCGUGGAGUAaa--GGUUGaG- -5'
6377 5' -53.5 NC_001847.1 + 99022 0.68 0.883754
Target:  5'- -gGCGCGCGCGgCUUCGUggaaggcgcCCAGCg- -3'
miRNA:   3'- gaCGCGCGCGU-GGAGUAaa-------GGUUGag -5'
6377 5' -53.5 NC_001847.1 + 98879 0.69 0.836435
Target:  5'- -gGCGCGUGCGCCUgGgcggcCCAggccgggaGCUCg -3'
miRNA:   3'- gaCGCGCGCGUGGAgUaaa--GGU--------UGAG- -5'
6377 5' -53.5 NC_001847.1 + 98452 0.66 0.943317
Target:  5'- -aGCGCGUGuCGCguguagggCAUggCCAGCUCg -3'
miRNA:   3'- gaCGCGCGC-GUGga------GUAaaGGUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 98022 0.67 0.916704
Target:  5'- -gGCGUGCGCGCCccagagCAUgaacaCCAGCg- -3'
miRNA:   3'- gaCGCGCGCGUGGa-----GUAaa---GGUUGag -5'
6377 5' -53.5 NC_001847.1 + 97847 0.68 0.883754
Target:  5'- -gGCuGCGCGCGCCUUAUa--CAauGCUCc -3'
miRNA:   3'- gaCG-CGCGCGUGGAGUAaagGU--UGAG- -5'
6377 5' -53.5 NC_001847.1 + 97308 0.66 0.943317
Target:  5'- -gGgGCGCGUGCCUCcg-UCCGAg-- -3'
miRNA:   3'- gaCgCGCGCGUGGAGuaaAGGUUgag -5'
6377 5' -53.5 NC_001847.1 + 96554 0.67 0.922538
Target:  5'- -cGCGCGCGCucaacgccaggaGCCUCcgcggcUCCGGCa- -3'
miRNA:   3'- gaCGCGCGCG------------UGGAGuaa---AGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 93683 0.76 0.473771
Target:  5'- -cGCGCGUGCAgCUCucgUUCCggUUCa -3'
miRNA:   3'- gaCGCGCGCGUgGAGua-AAGGuuGAG- -5'
6377 5' -53.5 NC_001847.1 + 93205 0.67 0.922538
Target:  5'- uCUGCaGCGUGCGCCUCcagGUaUCgAACa- -3'
miRNA:   3'- -GACG-CGCGCGUGGAG---UAaAGgUUGag -5'
6377 5' -53.5 NC_001847.1 + 92234 0.66 0.938505
Target:  5'- -aGCGCGCGC-UCUCGag-CCGccugcaGCUCg -3'
miRNA:   3'- gaCGCGCGCGuGGAGUaaaGGU------UGAG- -5'
6377 5' -53.5 NC_001847.1 + 91960 0.83 0.188456
Target:  5'- -gGCGCGCGCA-CUC-UUUCCAACUCa -3'
miRNA:   3'- gaCGCGCGCGUgGAGuAAAGGUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 91164 0.74 0.585759
Target:  5'- -gGCcaCGCGCGCCUUAUauagaUCCAGCUCg -3'
miRNA:   3'- gaCGc-GCGCGUGGAGUAa----AGGUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 90451 0.67 0.928116
Target:  5'- -aGCGCGCGguCCgcgCGgcccaUCCGcgGCUCg -3'
miRNA:   3'- gaCGCGCGCguGGa--GUaa---AGGU--UGAG- -5'
6377 5' -53.5 NC_001847.1 + 90312 0.7 0.800819
Target:  5'- -aGCGCGacCGCGCC-CAUUgCCGACUg -3'
miRNA:   3'- gaCGCGC--GCGUGGaGUAAaGGUUGAg -5'
6377 5' -53.5 NC_001847.1 + 89178 0.68 0.868874
Target:  5'- -cGaCGCGCGCGCCUUuucgCCGAUg- -3'
miRNA:   3'- gaC-GCGCGCGUGGAGuaaaGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 89136 0.67 0.910615
Target:  5'- -cGUGCGCGCG-CUCGUgcccgUCAACUUu -3'
miRNA:   3'- gaCGCGCGCGUgGAGUAaa---GGUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 88922 0.66 0.933439
Target:  5'- -cGCGCGCGCGgCUCugcgCCAuGCg- -3'
miRNA:   3'- gaCGCGCGCGUgGAGuaaaGGU-UGag -5'
6377 5' -53.5 NC_001847.1 + 88627 0.69 0.836435
Target:  5'- gUGCGCGCGCACgUgCGcgagagCCuGCUCa -3'
miRNA:   3'- gACGCGCGCGUGgA-GUaaa---GGuUGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.