miRNA display CGI


Results 81 - 100 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6377 5' -53.5 NC_001847.1 + 88473 0.71 0.7527
Target:  5'- -cGCGCGUGCugCUCGc--CCuACUCu -3'
miRNA:   3'- gaCGCGCGCGugGAGUaaaGGuUGAG- -5'
6377 5' -53.5 NC_001847.1 + 87470 0.67 0.904272
Target:  5'- -gGCGCGCGCccGCUUCGUaaacuuggCCGuGCUCg -3'
miRNA:   3'- gaCGCGCGCG--UGGAGUAaa------GGU-UGAG- -5'
6377 5' -53.5 NC_001847.1 + 87096 0.66 0.933439
Target:  5'- -gGCGCGCGCGgaCUCgcgcuGUUUCCGcGCUUc -3'
miRNA:   3'- gaCGCGCGCGUg-GAG-----UAAAGGU-UGAG- -5'
6377 5' -53.5 NC_001847.1 + 85196 0.67 0.916704
Target:  5'- gUGCGCggcaccGCGCGCCaCGgcgUCCAACg- -3'
miRNA:   3'- gACGCG------CGCGUGGaGUaa-AGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 84552 0.69 0.827808
Target:  5'- -gGgGCGUGCGCCUCGUacacggCCucCUCg -3'
miRNA:   3'- gaCgCGCGCGUGGAGUAaa----GGuuGAG- -5'
6377 5' -53.5 NC_001847.1 + 84189 0.68 0.882308
Target:  5'- -gGCGuCGUGCGCCagCAgccgcugcuggUCCAGCUCc -3'
miRNA:   3'- gaCGC-GCGCGUGGa-GUaa---------AGGUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 83604 0.71 0.7527
Target:  5'- -cGCGCGCGCGCg-CAgccUCCGACa- -3'
miRNA:   3'- gaCGCGCGCGUGgaGUaa-AGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 82882 0.66 0.943317
Target:  5'- gUGCGgGCGCGCCgCAg--CCAAg-- -3'
miRNA:   3'- gACGCgCGCGUGGaGUaaaGGUUgag -5'
6377 5' -53.5 NC_001847.1 + 82571 0.67 0.916704
Target:  5'- -gGC-CGC-CGCCUCGagcUCCAGCUCu -3'
miRNA:   3'- gaCGcGCGcGUGGAGUaa-AGGUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 81710 0.66 0.938998
Target:  5'- -gGCGCGCGCGCCgguggaagcggcacgCGcccUCCAGCc- -3'
miRNA:   3'- gaCGCGCGCGUGGa--------------GUaa-AGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 81702 0.7 0.809991
Target:  5'- gCUGCGCGCGCugCggCAcgcgcgcgCCGACg- -3'
miRNA:   3'- -GACGCGCGCGugGa-GUaaa-----GGUUGag -5'
6377 5' -53.5 NC_001847.1 + 80868 0.67 0.928116
Target:  5'- -cGCGCGgaugaGCGCCUCGag-CC-GCUCg -3'
miRNA:   3'- gaCGCGCg----CGUGGAGUaaaGGuUGAG- -5'
6377 5' -53.5 NC_001847.1 + 78656 0.71 0.722382
Target:  5'- -gGuCGCGCGCGCCUgCGUcgCCGGCg- -3'
miRNA:   3'- gaC-GCGCGCGUGGA-GUAaaGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 78449 0.66 0.952187
Target:  5'- gCUGgGCuGCcuGCACCUCGUgcgcaCgGACUCg -3'
miRNA:   3'- -GACgCG-CG--CGUGGAGUAaa---GgUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 78321 0.76 0.464092
Target:  5'- -gGCGCGCGCGCCgCGggcCCGGCUUg -3'
miRNA:   3'- gaCGCGCGCGUGGaGUaaaGGUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 78137 0.66 0.943317
Target:  5'- -cGgGCGCGCGCCggcc-UgCGGCUCa -3'
miRNA:   3'- gaCgCGCGCGUGGaguaaAgGUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 77082 0.68 0.883754
Target:  5'- -cGCGCGCGCGCCaaUCGgcggCCcGCg- -3'
miRNA:   3'- gaCGCGCGCGUGG--AGUaaa-GGuUGag -5'
6377 5' -53.5 NC_001847.1 + 76222 0.69 0.81899
Target:  5'- -aGCGCGCGUgccgACCUCGUc-CCGACcCg -3'
miRNA:   3'- gaCGCGCGCG----UGGAGUAaaGGUUGaG- -5'
6377 5' -53.5 NC_001847.1 + 75661 0.69 0.844862
Target:  5'- -cGCGgGCGUugCUCGUgaaggCCGGgUCg -3'
miRNA:   3'- gaCGCgCGCGugGAGUAaa---GGUUgAG- -5'
6377 5' -53.5 NC_001847.1 + 75245 0.71 0.723406
Target:  5'- -cGCGCGCGCGCCgcccuccucgCCAACg- -3'
miRNA:   3'- gaCGCGCGCGUGGaguaaa----GGUUGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.