miRNA display CGI


Results 41 - 60 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6377 5' -53.5 NC_001847.1 + 112885 0.73 0.637552
Target:  5'- gCUGCGC-CGCGCgCUCGUcggcuucUUCCuGCUCg -3'
miRNA:   3'- -GACGCGcGCGUG-GAGUA-------AAGGuUGAG- -5'
6377 5' -53.5 NC_001847.1 + 47027 0.68 0.883754
Target:  5'- -gGCGCGCGaCACCgugaUUCCGGC-Ca -3'
miRNA:   3'- gaCGCGCGC-GUGGaguaAAGGUUGaG- -5'
6377 5' -53.5 NC_001847.1 + 99460 0.67 0.928116
Target:  5'- uUGCGCaGCGCGCCgcUCGgggCCAAgaUCa -3'
miRNA:   3'- gACGCG-CGCGUGG--AGUaaaGGUUg-AG- -5'
6377 5' -53.5 NC_001847.1 + 93205 0.67 0.922538
Target:  5'- uCUGCaGCGUGCGCCUCcagGUaUCgAACa- -3'
miRNA:   3'- -GACG-CGCGCGUGGAG---UAaAGgUUGag -5'
6377 5' -53.5 NC_001847.1 + 101596 0.68 0.883033
Target:  5'- -cGCGUGCGCcucgacucaACCUCcgcguccGUcUCCGGCUCc -3'
miRNA:   3'- gaCGCGCGCG---------UGGAG-------UAaAGGUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 23107 0.7 0.781993
Target:  5'- -cGCGCGCGcCACCgcgUCGUUUCUAAa-- -3'
miRNA:   3'- gaCGCGCGC-GUGG---AGUAAAGGUUgag -5'
6377 5' -53.5 NC_001847.1 + 107456 0.73 0.606848
Target:  5'- -gGCGCucGCGCGCCUCAgc-CCGACg- -3'
miRNA:   3'- gaCGCG--CGCGUGGAGUaaaGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 132306 0.74 0.59629
Target:  5'- -cGCGCGCGCugUUCAgcccgCCGGCg- -3'
miRNA:   3'- gaCGCGCGCGugGAGUaaa--GGUUGag -5'
6377 5' -53.5 NC_001847.1 + 120741 0.7 0.809991
Target:  5'- gCUGCGaGCgGgGCCUCGcg-CCAGCUCg -3'
miRNA:   3'- -GACGCgCG-CgUGGAGUaaaGGUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 60317 0.69 0.844862
Target:  5'- -aGCGCGCGCGCCa-----CCuGCUCg -3'
miRNA:   3'- gaCGCGCGCGUGGaguaaaGGuUGAG- -5'
6377 5' -53.5 NC_001847.1 + 60741 0.69 0.836435
Target:  5'- -gGCGCGgGCGCggCGcgguggcgguUUUCCAGCUCc -3'
miRNA:   3'- gaCGCGCgCGUGgaGU----------AAAGGUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 67300 0.7 0.809991
Target:  5'- -aGCGCGCGCGCCagcg--CCGGCa- -3'
miRNA:   3'- gaCGCGCGCGUGGaguaaaGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 69753 0.72 0.670325
Target:  5'- cCUGCcaccGCGCGCugUUCAgcuuUUUCCAGCa- -3'
miRNA:   3'- -GACG----CGCGCGugGAGU----AAAGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 99220 0.67 0.904272
Target:  5'- -aGCGCGCGCgACCgcCGgugCCAugccGCUCg -3'
miRNA:   3'- gaCGCGCGCG-UGGa-GUaaaGGU----UGAG- -5'
6377 5' -53.5 NC_001847.1 + 140 0.68 0.890838
Target:  5'- aUGUGCGCGgcCAUCUUGcUUCCAaACUCa -3'
miRNA:   3'- gACGCGCGC--GUGGAGUaAAGGU-UGAG- -5'
6377 5' -53.5 NC_001847.1 + 89178 0.68 0.868874
Target:  5'- -cGaCGCGCGCGCCUUuucgCCGAUg- -3'
miRNA:   3'- gaC-GCGCGCGUGGAGuaaaGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 98022 0.67 0.916704
Target:  5'- -gGCGUGCGCGCCccagagCAUgaacaCCAGCg- -3'
miRNA:   3'- gaCGCGCGCGUGGa-----GUAaa---GGUUGag -5'
6377 5' -53.5 NC_001847.1 + 70132 0.66 0.952187
Target:  5'- aUGCGCauGCGCGCCa----UCCAgcaGCUCg -3'
miRNA:   3'- gACGCG--CGCGUGGaguaaAGGU---UGAG- -5'
6377 5' -53.5 NC_001847.1 + 72960 0.67 0.928116
Target:  5'- -cGCGCGCGUggACCUCGgcgUgGGCUa -3'
miRNA:   3'- gaCGCGCGCG--UGGAGUaaaGgUUGAg -5'
6377 5' -53.5 NC_001847.1 + 121121 0.67 0.914904
Target:  5'- aCUGCGCGCuGCGCCgccgccugcugCCGuGCUCu -3'
miRNA:   3'- -GACGCGCG-CGUGGaguaaa-----GGU-UGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.