miRNA display CGI


Results 41 - 60 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6377 5' -53.5 NC_001847.1 + 28511 0.68 0.861089
Target:  5'- -aGCGCGCGCGCUUUuug-CCGuggcGCUUg -3'
miRNA:   3'- gaCGCGCGCGUGGAGuaaaGGU----UGAG- -5'
6377 5' -53.5 NC_001847.1 + 105666 0.7 0.781993
Target:  5'- -aGCGCGCGCGCCagcgccCAgg-CCGACg- -3'
miRNA:   3'- gaCGCGCGCGUGGa-----GUaaaGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 51549 0.75 0.493425
Target:  5'- gCUGCGCGCGCGCg-CGUgcUCgGGCUCg -3'
miRNA:   3'- -GACGCGCGCGUGgaGUAa-AGgUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 75661 0.69 0.844862
Target:  5'- -cGCGgGCGUugCUCGUgaaggCCGGgUCg -3'
miRNA:   3'- gaCGCgCGCGugGAGUAaa---GGUUgAG- -5'
6377 5' -53.5 NC_001847.1 + 61201 0.76 0.464092
Target:  5'- uUGCGCGCGCGCCagGUacgcgCCGGCUg -3'
miRNA:   3'- gACGCGCGCGUGGagUAaa---GGUUGAg -5'
6377 5' -53.5 NC_001847.1 + 62146 0.67 0.928116
Target:  5'- -cGCGCcCGCGCUgCGg--CCAGCUCc -3'
miRNA:   3'- gaCGCGcGCGUGGaGUaaaGGUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 132306 0.74 0.59629
Target:  5'- -cGCGCGCGCugUUCAgcccgCCGGCg- -3'
miRNA:   3'- gaCGCGCGCGugGAGUaaa--GGUUGag -5'
6377 5' -53.5 NC_001847.1 + 65615 0.67 0.922538
Target:  5'- -cGCGCGUGCugCUCGgcgCagGGCUUg -3'
miRNA:   3'- gaCGCGCGCGugGAGUaaaGg-UUGAG- -5'
6377 5' -53.5 NC_001847.1 + 121121 0.67 0.914904
Target:  5'- aCUGCGCGCuGCGCCgccgccugcugCCGuGCUCu -3'
miRNA:   3'- -GACGCGCG-CGUGGaguaaa-----GGU-UGAG- -5'
6377 5' -53.5 NC_001847.1 + 19686 0.68 0.890838
Target:  5'- -cGgGUGCGCGCCgUCGguuugaaugCCGGCUCc -3'
miRNA:   3'- gaCgCGCGCGUGG-AGUaaa------GGUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 122926 0.68 0.883754
Target:  5'- gUGUGCGCGCGCCgcgCAag-CCAGaagCg -3'
miRNA:   3'- gACGCGCGCGUGGa--GUaaaGGUUga-G- -5'
6377 5' -53.5 NC_001847.1 + 56284 0.68 0.883754
Target:  5'- -aGgGCGCGCACCgcgagCAca-CCAGCUa -3'
miRNA:   3'- gaCgCGCGCGUGGa----GUaaaGGUUGAg -5'
6377 5' -53.5 NC_001847.1 + 89178 0.68 0.868874
Target:  5'- -cGaCGCGCGCGCCUUuucgCCGAUg- -3'
miRNA:   3'- gaC-GCGCGCGUGGAGuaaaGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 46459 0.69 0.836435
Target:  5'- aUGCGCGCGCggaugGCCUugcgCAUggCCAGC-Ca -3'
miRNA:   3'- gACGCGCGCG-----UGGA----GUAaaGGUUGaG- -5'
6377 5' -53.5 NC_001847.1 + 28109 0.69 0.835581
Target:  5'- -cGCGCGCGaCACCgccgauuUCAUggCCGGCg- -3'
miRNA:   3'- gaCGCGCGC-GUGG-------AGUAaaGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 38033 0.7 0.809991
Target:  5'- gUGgGCGCGCGCCgccgcgCCGccGCUCg -3'
miRNA:   3'- gACgCGCGCGUGGaguaaaGGU--UGAG- -5'
6377 5' -53.5 NC_001847.1 + 67300 0.7 0.809991
Target:  5'- -aGCGCGCGCGCCagcg--CCGGCa- -3'
miRNA:   3'- gaCGCGCGCGUGGaguaaaGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 43524 0.7 0.772359
Target:  5'- -gGCGCGCGCGggcuuCCUCGcggCCAACa- -3'
miRNA:   3'- gaCGCGCGCGU-----GGAGUaaaGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 78656 0.71 0.722382
Target:  5'- -gGuCGCGCGCGCCUgCGUcgCCGGCg- -3'
miRNA:   3'- gaC-GCGCGCGUGGA-GUAaaGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 99146 0.72 0.659774
Target:  5'- uCUGCGCuauccGCGCGCCUUGUggcgCCAGC-Cg -3'
miRNA:   3'- -GACGCG-----CGCGUGGAGUAaa--GGUUGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.