miRNA display CGI


Results 61 - 80 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6377 5' -53.5 NC_001847.1 + 93205 0.67 0.922538
Target:  5'- uCUGCaGCGUGCGCCUCcagGUaUCgAACa- -3'
miRNA:   3'- -GACG-CGCGCGUGGAG---UAaAGgUUGag -5'
6377 5' -53.5 NC_001847.1 + 43524 0.7 0.772359
Target:  5'- -gGCGCGCGCGggcuuCCUCGcggCCAACa- -3'
miRNA:   3'- gaCGCGCGCGU-----GGAGUaaaGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 41290 0.68 0.876431
Target:  5'- -aGCGCGCcggcguaguGCGCgaCGUUUCCGGCg- -3'
miRNA:   3'- gaCGCGCG---------CGUGgaGUAAAGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 77082 0.68 0.883754
Target:  5'- -cGCGCGCGCGCCaaUCGgcggCCcGCg- -3'
miRNA:   3'- gaCGCGCGCGUGG--AGUaaa-GGuUGag -5'
6377 5' -53.5 NC_001847.1 + 122926 0.68 0.883754
Target:  5'- gUGUGCGCGCGCCgcgCAag-CCAGaagCg -3'
miRNA:   3'- gACGCGCGCGUGGa--GUaaaGGUUga-G- -5'
6377 5' -53.5 NC_001847.1 + 46908 0.71 0.722382
Target:  5'- -cGCGcCGCGCcgGCCUCGgcUCCGGCg- -3'
miRNA:   3'- gaCGC-GCGCG--UGGAGUaaAGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 81702 0.7 0.809991
Target:  5'- gCUGCGCGCGCugCggCAcgcgcgcgCCGACg- -3'
miRNA:   3'- -GACGCGCGCGugGa-GUaaa-----GGUUGag -5'
6377 5' -53.5 NC_001847.1 + 46459 0.69 0.836435
Target:  5'- aUGCGCGCGCggaugGCCUugcgCAUggCCAGC-Ca -3'
miRNA:   3'- gACGCGCGCG-----UGGA----GUAaaGGUUGaG- -5'
6377 5' -53.5 NC_001847.1 + 107200 0.69 0.844862
Target:  5'- -aGCGCGCGCGCCgCGgc-CCAggcGCUg -3'
miRNA:   3'- gaCGCGCGCGUGGaGUaaaGGU---UGAg -5'
6377 5' -53.5 NC_001847.1 + 38033 0.7 0.809991
Target:  5'- gUGgGCGCGCGCCgccgcgCCGccGCUCg -3'
miRNA:   3'- gACgCGCGCGUGGaguaaaGGU--UGAG- -5'
6377 5' -53.5 NC_001847.1 + 107456 0.73 0.606848
Target:  5'- -gGCGCucGCGCGCCUCAgc-CCGACg- -3'
miRNA:   3'- gaCGCG--CGCGUGGAGUaaaGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 112885 0.73 0.637552
Target:  5'- gCUGCGC-CGCGCgCUCGUcggcuucUUCCuGCUCg -3'
miRNA:   3'- -GACGCGcGCGUG-GAGUA-------AAGGuUGAG- -5'
6377 5' -53.5 NC_001847.1 + 99460 0.67 0.928116
Target:  5'- uUGCGCaGCGCGCCgcUCGgggCCAAgaUCa -3'
miRNA:   3'- gACGCG-CGCGUGG--AGUaaaGGUUg-AG- -5'
6377 5' -53.5 NC_001847.1 + 82882 0.66 0.943317
Target:  5'- gUGCGgGCGCGCCgCAg--CCAAg-- -3'
miRNA:   3'- gACGCgCGCGUGGaGUaaaGGUUgag -5'
6377 5' -53.5 NC_001847.1 + 2199 0.66 0.946535
Target:  5'- gUGCGgGCGCACCUCAaacaugcgguagaggUCgCGGC-Cg -3'
miRNA:   3'- gACGCgCGCGUGGAGUaa-------------AG-GUUGaG- -5'
6377 5' -53.5 NC_001847.1 + 103594 0.66 0.947877
Target:  5'- -gGCG-GCGCcgGCCUCGUcgucgUCCGACg- -3'
miRNA:   3'- gaCGCgCGCG--UGGAGUAa----AGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 59913 0.66 0.943317
Target:  5'- -cGCGCGCGCGCggCGagagCCGGCg- -3'
miRNA:   3'- gaCGCGCGCGUGgaGUaaa-GGUUGag -5'
6377 5' -53.5 NC_001847.1 + 65615 0.67 0.922538
Target:  5'- -cGCGCGUGCugCUCGgcgCagGGCUUg -3'
miRNA:   3'- gaCGCGCGCGugGAGUaaaGg-UUGAG- -5'
6377 5' -53.5 NC_001847.1 + 53447 0.66 0.933439
Target:  5'- -gGCGCGCGCGCCUgGcgcUCUAcgGCg- -3'
miRNA:   3'- gaCGCGCGCGUGGAgUaa-AGGU--UGag -5'
6377 5' -53.5 NC_001847.1 + 88922 0.66 0.933439
Target:  5'- -cGCGCGCGCGgCUCugcgCCAuGCg- -3'
miRNA:   3'- gaCGCGCGCGUgGAGuaaaGGU-UGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.