miRNA display CGI


Results 61 - 80 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6377 5' -53.5 NC_001847.1 + 89178 0.68 0.868874
Target:  5'- -cGaCGCGCGCGCCUUuucgCCGAUg- -3'
miRNA:   3'- gaC-GCGCGCGUGGAGuaaaGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 77082 0.68 0.883754
Target:  5'- -cGCGCGCGCGCCaaUCGgcggCCcGCg- -3'
miRNA:   3'- gaCGCGCGCGUGG--AGUaaa-GGuUGag -5'
6377 5' -53.5 NC_001847.1 + 107456 0.73 0.606848
Target:  5'- -gGCGCucGCGCGCCUCAgc-CCGACg- -3'
miRNA:   3'- gaCGCG--CGCGUGGAGUaaaGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 31026 0.72 0.659774
Target:  5'- -cGCGCGCGCGCCggCAacgCCGGC-Cg -3'
miRNA:   3'- gaCGCGCGCGUGGa-GUaaaGGUUGaG- -5'
6377 5' -53.5 NC_001847.1 + 55659 0.71 0.742694
Target:  5'- -aGaCGUGCGCGCCgcgc-UCCGGCUCg -3'
miRNA:   3'- gaC-GCGCGCGUGGaguaaAGGUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 23107 0.7 0.781993
Target:  5'- -cGCGCGCGcCACCgcgUCGUUUCUAAa-- -3'
miRNA:   3'- gaCGCGCGC-GUGG---AGUAAAGGUUgag -5'
6377 5' -53.5 NC_001847.1 + 81702 0.7 0.809991
Target:  5'- gCUGCGCGCGCugCggCAcgcgcgcgCCGACg- -3'
miRNA:   3'- -GACGCGCGCGugGa-GUaaa-----GGUUGag -5'
6377 5' -53.5 NC_001847.1 + 76222 0.69 0.81899
Target:  5'- -aGCGCGCGUgccgACCUCGUc-CCGACcCg -3'
miRNA:   3'- gaCGCGCGCG----UGGAGUAaaGGUUGaG- -5'
6377 5' -53.5 NC_001847.1 + 53029 0.69 0.836435
Target:  5'- gCUGCGCGCucGgGCCUCGgcUCCGAg-- -3'
miRNA:   3'- -GACGCGCG--CgUGGAGUaaAGGUUgag -5'
6377 5' -53.5 NC_001847.1 + 60317 0.69 0.844862
Target:  5'- -aGCGCGCGCGCCa-----CCuGCUCg -3'
miRNA:   3'- gaCGCGCGCGUGGaguaaaGGuUGAG- -5'
6377 5' -53.5 NC_001847.1 + 69897 0.66 0.947877
Target:  5'- gUGCGUGUGCACCaaGUUcCCGgaGCUg -3'
miRNA:   3'- gACGCGCGCGUGGagUAAaGGU--UGAg -5'
6377 5' -53.5 NC_001847.1 + 104398 0.66 0.943317
Target:  5'- -cGCGCcaGCGCGCCgcUCGgg-CCAGCg- -3'
miRNA:   3'- gaCGCG--CGCGUGG--AGUaaaGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 140 0.68 0.890838
Target:  5'- aUGUGCGCGgcCAUCUUGcUUCCAaACUCa -3'
miRNA:   3'- gACGCGCGC--GUGGAGUaAAGGU-UGAG- -5'
6377 5' -53.5 NC_001847.1 + 87470 0.67 0.904272
Target:  5'- -gGCGCGCGCccGCUUCGUaaacuuggCCGuGCUCg -3'
miRNA:   3'- gaCGCGCGCG--UGGAGUAaa------GGU-UGAG- -5'
6377 5' -53.5 NC_001847.1 + 65615 0.67 0.922538
Target:  5'- -cGCGCGUGCugCUCGgcgCagGGCUUg -3'
miRNA:   3'- gaCGCGCGCGugGAGUaaaGg-UUGAG- -5'
6377 5' -53.5 NC_001847.1 + 62146 0.67 0.928116
Target:  5'- -cGCGCcCGCGCUgCGg--CCAGCUCc -3'
miRNA:   3'- gaCGCGcGCGUGGaGUaaaGGUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 37977 0.66 0.931869
Target:  5'- -aGCGCGcCGCccuGCCUCAUUaugcuggauacgcaUCUgcAGCUCg -3'
miRNA:   3'- gaCGCGC-GCG---UGGAGUAA--------------AGG--UUGAG- -5'
6377 5' -53.5 NC_001847.1 + 87096 0.66 0.933439
Target:  5'- -gGCGCGCGCGgaCUCgcgcuGUUUCCGcGCUUc -3'
miRNA:   3'- gaCGCGCGCGUg-GAG-----UAAAGGU-UGAG- -5'
6377 5' -53.5 NC_001847.1 + 82882 0.66 0.943317
Target:  5'- gUGCGgGCGCGCCgCAg--CCAAg-- -3'
miRNA:   3'- gACGCgCGCGUGGaGUaaaGGUUgag -5'
6377 5' -53.5 NC_001847.1 + 67413 0.66 0.943317
Target:  5'- -gGCGCGUGUGCCgagaggCCAgGCUCa -3'
miRNA:   3'- gaCGCGCGCGUGGaguaaaGGU-UGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.