miRNA display CGI


Results 81 - 100 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6377 5' -53.5 NC_001847.1 + 53029 0.69 0.836435
Target:  5'- gCUGCGCGCucGgGCCUCGgcUCCGAg-- -3'
miRNA:   3'- -GACGCGCG--CgUGGAGUaaAGGUUgag -5'
6377 5' -53.5 NC_001847.1 + 76222 0.69 0.81899
Target:  5'- -aGCGCGCGUgccgACCUCGUc-CCGACcCg -3'
miRNA:   3'- gaCGCGCGCG----UGGAGUAaaGGUUGaG- -5'
6377 5' -53.5 NC_001847.1 + 81702 0.7 0.809991
Target:  5'- gCUGCGCGCGCugCggCAcgcgcgcgCCGACg- -3'
miRNA:   3'- -GACGCGCGCGugGa-GUaaa-----GGUUGag -5'
6377 5' -53.5 NC_001847.1 + 23107 0.7 0.781993
Target:  5'- -cGCGCGCGcCACCgcgUCGUUUCUAAa-- -3'
miRNA:   3'- gaCGCGCGC-GUGG---AGUAAAGGUUgag -5'
6377 5' -53.5 NC_001847.1 + 55659 0.71 0.742694
Target:  5'- -aGaCGUGCGCGCCgcgc-UCCGGCUCg -3'
miRNA:   3'- gaC-GCGCGCGUGGaguaaAGGUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 31026 0.72 0.659774
Target:  5'- -cGCGCGCGCGCCggCAacgCCGGC-Cg -3'
miRNA:   3'- gaCGCGCGCGUGGa-GUaaaGGUUGaG- -5'
6377 5' -53.5 NC_001847.1 + 107456 0.73 0.606848
Target:  5'- -gGCGCucGCGCGCCUCAgc-CCGACg- -3'
miRNA:   3'- gaCGCG--CGCGUGGAGUaaaGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 5675 0.67 0.916704
Target:  5'- -cGuCGCGCGCGgCggCGgccgCCAGCUCa -3'
miRNA:   3'- gaC-GCGCGCGUgGa-GUaaa-GGUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 93205 0.67 0.922538
Target:  5'- uCUGCaGCGUGCGCCUCcagGUaUCgAACa- -3'
miRNA:   3'- -GACG-CGCGCGUGGAG---UAaAGgUUGag -5'
6377 5' -53.5 NC_001847.1 + 99600 0.68 0.868874
Target:  5'- -cGCGCGC-CGCCUCGgcagCCAcgacCUCg -3'
miRNA:   3'- gaCGCGCGcGUGGAGUaaa-GGUu---GAG- -5'
6377 5' -53.5 NC_001847.1 + 131418 0.68 0.868874
Target:  5'- -cGCGUGCGCGCCgugg--CCGGCg- -3'
miRNA:   3'- gaCGCGCGCGUGGaguaaaGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 60811 0.68 0.868874
Target:  5'- -aGCGCGCGCGCCUgCGg---CAGCg- -3'
miRNA:   3'- gaCGCGCGCGUGGA-GUaaagGUUGag -5'
6377 5' -53.5 NC_001847.1 + 90451 0.67 0.928116
Target:  5'- -aGCGCGCGguCCgcgCGgcccaUCCGcgGCUCg -3'
miRNA:   3'- gaCGCGCGCguGGa--GUaa---AGGU--UGAG- -5'
6377 5' -53.5 NC_001847.1 + 96554 0.67 0.922538
Target:  5'- -cGCGCGCGCucaacgccaggaGCCUCcgcggcUCCGGCa- -3'
miRNA:   3'- gaCGCGCGCG------------UGGAGuaa---AGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 111270 0.69 0.848176
Target:  5'- aUGCGCGCGCugCgaaagCAcUUuacgcgcgaggccagCCGGCUCg -3'
miRNA:   3'- gACGCGCGCGugGa----GUaAA---------------GGUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 18780 0.69 0.853083
Target:  5'- -aGCGCGCcaGCACCacgCAca-CCAGCUCc -3'
miRNA:   3'- gaCGCGCG--CGUGGa--GUaaaGGUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 104239 0.66 0.943317
Target:  5'- -cGCcgGCGCGCGCCUCAc--CgGGCUg -3'
miRNA:   3'- gaCG--CGCGCGUGGAGUaaaGgUUGAg -5'
6377 5' -53.5 NC_001847.1 + 109690 0.69 0.853083
Target:  5'- cCUGCGCGCGCucgGCCUgCAg--UCGGCg- -3'
miRNA:   3'- -GACGCGCGCG---UGGA-GUaaaGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 102259 0.68 0.861089
Target:  5'- -cGCgGCGCGCACCgugcccUCCAGCg- -3'
miRNA:   3'- gaCG-CGCGCGUGGaguaa-AGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 109951 0.68 0.861089
Target:  5'- -cGCGCGCGgGgCUCGcuggCCAGCUg -3'
miRNA:   3'- gaCGCGCGCgUgGAGUaaa-GGUUGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.