miRNA display CGI


Results 101 - 120 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6377 5' -53.5 NC_001847.1 + 99600 0.68 0.868874
Target:  5'- -cGCGCGC-CGCCUCGgcagCCAcgacCUCg -3'
miRNA:   3'- gaCGCGCGcGUGGAGUaaa-GGUu---GAG- -5'
6377 5' -53.5 NC_001847.1 + 58078 0.68 0.876431
Target:  5'- -cGCGCGCGCGCCgcagCGggugCCGcgccGCUa -3'
miRNA:   3'- gaCGCGCGCGUGGa---GUaaa-GGU----UGAg -5'
6377 5' -53.5 NC_001847.1 + 65699 0.68 0.876431
Target:  5'- -cGCGCGCGCGCCgccg-UCCGcCa- -3'
miRNA:   3'- gaCGCGCGCGUGGaguaaAGGUuGag -5'
6377 5' -53.5 NC_001847.1 + 111270 0.69 0.848176
Target:  5'- aUGCGCGCGCugCgaaagCAcUUuacgcgcgaggccagCCGGCUCg -3'
miRNA:   3'- gACGCGCGCGugGa----GUaAA---------------GGUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 99022 0.68 0.883754
Target:  5'- -gGCGCGCGCGgCUUCGUggaaggcgcCCAGCg- -3'
miRNA:   3'- gaCGCGCGCGU-GGAGUAaa-------GGUUGag -5'
6377 5' -53.5 NC_001847.1 + 108376 0.68 0.883754
Target:  5'- -gGCGCGCGCACUgacCAgg-CCGcgcacccgcGCUCu -3'
miRNA:   3'- gaCGCGCGCGUGGa--GUaaaGGU---------UGAG- -5'
6377 5' -53.5 NC_001847.1 + 90451 0.67 0.928116
Target:  5'- -aGCGCGCGguCCgcgCGgcccaUCCGcgGCUCg -3'
miRNA:   3'- gaCGCGCGCguGGa--GUaa---AGGU--UGAG- -5'
6377 5' -53.5 NC_001847.1 + 80868 0.67 0.928116
Target:  5'- -cGCGCGgaugaGCGCCUCGag-CC-GCUCg -3'
miRNA:   3'- gaCGCGCg----CGUGGAGUaaaGGuUGAG- -5'
6377 5' -53.5 NC_001847.1 + 118688 0.66 0.932918
Target:  5'- uCUGCGcCGCGgGCCUCGUcguaguuUUCguAgUCg -3'
miRNA:   3'- -GACGC-GCGCgUGGAGUA-------AAGguUgAG- -5'
6377 5' -53.5 NC_001847.1 + 43271 0.66 0.933439
Target:  5'- gCUGCGCGUccgGCGCUUCGgcUUCCugaUCg -3'
miRNA:   3'- -GACGCGCG---CGUGGAGUa-AAGGuugAG- -5'
6377 5' -53.5 NC_001847.1 + 100310 0.66 0.933439
Target:  5'- gCUGCGCGCuCGCCUCcagcgCCcGgUCg -3'
miRNA:   3'- -GACGCGCGcGUGGAGuaaa-GGuUgAG- -5'
6377 5' -53.5 NC_001847.1 + 69110 0.68 0.876431
Target:  5'- -cGUGCGCGUauACCUCcuccaggUCCAGCg- -3'
miRNA:   3'- gaCGCGCGCG--UGGAGuaa----AGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 12323 0.67 0.928116
Target:  5'- -gGUGgGCGCGCC-Cg---CCGGCUCg -3'
miRNA:   3'- gaCGCgCGCGUGGaGuaaaGGUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 72079 0.76 0.445051
Target:  5'- gCUGCGCcCGCGCCUCGc--CCAGCUUu -3'
miRNA:   3'- -GACGCGcGCGUGGAGUaaaGGUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 128455 0.77 0.408329
Target:  5'- cCUGCGCGCGCGCC-CGg--CCGGC-Cg -3'
miRNA:   3'- -GACGCGCGCGUGGaGUaaaGGUUGaG- -5'
6377 5' -53.5 NC_001847.1 + 101505 0.77 0.408329
Target:  5'- -cGCGCGCGCGCCUCGcggUCAGC-Cg -3'
miRNA:   3'- gaCGCGCGCGUGGAGUaaaGGUUGaG- -5'
6377 5' -53.5 NC_001847.1 + 109690 0.69 0.853083
Target:  5'- cCUGCGCGCGCucgGCCUgCAg--UCGGCg- -3'
miRNA:   3'- -GACGCGCGCG---UGGA-GUaaaGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 91960 0.83 0.188456
Target:  5'- -gGCGCGCGCA-CUC-UUUCCAACUCa -3'
miRNA:   3'- gaCGCGCGCGUgGAGuAAAGGUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 108177 1.09 0.003917
Target:  5'- gCUGCGCGCGCACCUCAUUUCCAACUCc -3'
miRNA:   3'- -GACGCGCGCGUGGAGUAAAGGUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 124386 0.68 0.883754
Target:  5'- -cGCGCGCGCAgCUCug--CCAGa-- -3'
miRNA:   3'- gaCGCGCGCGUgGAGuaaaGGUUgag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.