Results 41 - 60 of 191 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6377 | 5' | -53.5 | NC_001847.1 | + | 3891 | 0.66 | 0.952187 |
Target: 5'- -cGCGCG-GCGCCgcggCGUagCCAGCg- -3' miRNA: 3'- gaCGCGCgCGUGGa---GUAaaGGUUGag -5' |
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6377 | 5' | -53.5 | NC_001847.1 | + | 16093 | 0.66 | 0.952187 |
Target: 5'- -cGCGCGCGUGCCggCGUaccgcUUCCcACa- -3' miRNA: 3'- gaCGCGCGCGUGGa-GUA-----AAGGuUGag -5' |
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6377 | 5' | -53.5 | NC_001847.1 | + | 46447 | 0.66 | 0.952187 |
Target: 5'- uCUGCGCGCGCAgCgccg--CCAgggcACUUa -3' miRNA: 3'- -GACGCGCGCGUgGaguaaaGGU----UGAG- -5' |
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6377 | 5' | -53.5 | NC_001847.1 | + | 102769 | 0.66 | 0.952187 |
Target: 5'- -cGUGCGCGCGCCguucugCAccaaaaggCCAGCa- -3' miRNA: 3'- gaCGCGCGCGUGGa-----GUaaa-----GGUUGag -5' |
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6377 | 5' | -53.5 | NC_001847.1 | + | 122703 | 0.66 | 0.952187 |
Target: 5'- -cGCGCGCGCugugccggcGCCUUGgagcCCGcACUCa -3' miRNA: 3'- gaCGCGCGCG---------UGGAGUaaa-GGU-UGAG- -5' |
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6377 | 5' | -53.5 | NC_001847.1 | + | 104239 | 0.66 | 0.943317 |
Target: 5'- -cGCcgGCGCGCGCCUCAc--CgGGCUg -3' miRNA: 3'- gaCG--CGCGCGUGGAGUaaaGgUUGAg -5' |
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6377 | 5' | -53.5 | NC_001847.1 | + | 115471 | 0.66 | 0.943317 |
Target: 5'- ---gGCGCGCACCcggucgcaGUUUCCGGCg- -3' miRNA: 3'- gacgCGCGCGUGGag------UAAAGGUUGag -5' |
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6377 | 5' | -53.5 | NC_001847.1 | + | 12323 | 0.67 | 0.928116 |
Target: 5'- -gGUGgGCGCGCC-Cg---CCGGCUCg -3' miRNA: 3'- gaCGCgCGCGUGGaGuaaaGGUUGAG- -5' |
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6377 | 5' | -53.5 | NC_001847.1 | + | 80868 | 0.67 | 0.928116 |
Target: 5'- -cGCGCGgaugaGCGCCUCGag-CC-GCUCg -3' miRNA: 3'- gaCGCGCg----CGUGGAGUaaaGGuUGAG- -5' |
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6377 | 5' | -53.5 | NC_001847.1 | + | 118688 | 0.66 | 0.932918 |
Target: 5'- uCUGCGcCGCGgGCCUCGUcguaguuUUCguAgUCg -3' miRNA: 3'- -GACGC-GCGCgUGGAGUA-------AAGguUgAG- -5' |
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6377 | 5' | -53.5 | NC_001847.1 | + | 43271 | 0.66 | 0.933439 |
Target: 5'- gCUGCGCGUccgGCGCUUCGgcUUCCugaUCg -3' miRNA: 3'- -GACGCGCG---CGUGGAGUa-AAGGuugAG- -5' |
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6377 | 5' | -53.5 | NC_001847.1 | + | 100310 | 0.66 | 0.933439 |
Target: 5'- gCUGCGCGCuCGCCUCcagcgCCcGgUCg -3' miRNA: 3'- -GACGCGCGcGUGGAGuaaa-GGuUgAG- -5' |
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6377 | 5' | -53.5 | NC_001847.1 | + | 100446 | 0.66 | 0.933439 |
Target: 5'- -cGCgGCGCGCAaguCCUCGcg-CCAgcGCUCc -3' miRNA: 3'- gaCG-CGCGCGU---GGAGUaaaGGU--UGAG- -5' |
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6377 | 5' | -53.5 | NC_001847.1 | + | 131650 | 0.66 | 0.933439 |
Target: 5'- -aGCuCGCGCGgCUCAUgugCgAGCUCu -3' miRNA: 3'- gaCGcGCGCGUgGAGUAaa-GgUUGAG- -5' |
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6377 | 5' | -53.5 | NC_001847.1 | + | 35462 | 0.66 | 0.933439 |
Target: 5'- -cGCGcCGCGCGCCgCAaagCCAGCc- -3' miRNA: 3'- gaCGC-GCGCGUGGaGUaaaGGUUGag -5' |
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6377 | 5' | -53.5 | NC_001847.1 | + | 131165 | 0.66 | 0.938505 |
Target: 5'- -cGCGCugGCGCugCUCAcggcCCAcCUCg -3' miRNA: 3'- gaCGCG--CGCGugGAGUaaa-GGUuGAG- -5' |
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6377 | 5' | -53.5 | NC_001847.1 | + | 71709 | 0.66 | 0.938505 |
Target: 5'- uCUGCGCgGUGCGCCggcccgCCGGCg- -3' miRNA: 3'- -GACGCG-CGCGUGGaguaaaGGUUGag -5' |
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6377 | 5' | -53.5 | NC_001847.1 | + | 75214 | 0.66 | 0.938505 |
Target: 5'- uUGCGUgGCGC-CCUUccg-CCGGCUCu -3' miRNA: 3'- gACGCG-CGCGuGGAGuaaaGGUUGAG- -5' |
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6377 | 5' | -53.5 | NC_001847.1 | + | 81710 | 0.66 | 0.938998 |
Target: 5'- -gGCGCGCGCGCCgguggaagcggcacgCGcccUCCAGCc- -3' miRNA: 3'- gaCGCGCGCGUGGa--------------GUaa-AGGUUGag -5' |
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6377 | 5' | -53.5 | NC_001847.1 | + | 106586 | 0.66 | 0.943317 |
Target: 5'- -gGCGC-CGUGuCCUCGUcgUCUGGCUCg -3' miRNA: 3'- gaCGCGcGCGU-GGAGUAa-AGGUUGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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