miRNA display CGI


Results 61 - 80 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6377 5' -53.5 NC_001847.1 + 71709 0.66 0.938505
Target:  5'- uCUGCGCgGUGCGCCggcccgCCGGCg- -3'
miRNA:   3'- -GACGCG-CGCGUGGaguaaaGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 131165 0.66 0.938505
Target:  5'- -cGCGCugGCGCugCUCAcggcCCAcCUCg -3'
miRNA:   3'- gaCGCG--CGCGugGAGUaaa-GGUuGAG- -5'
6377 5' -53.5 NC_001847.1 + 85196 0.67 0.916704
Target:  5'- gUGCGCggcaccGCGCGCCaCGgcgUCCAACg- -3'
miRNA:   3'- gACGCG------CGCGUGGaGUaa-AGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 74842 0.67 0.916704
Target:  5'- -cGCGCGCGCGCCgcccg-CCGccccGCUg -3'
miRNA:   3'- gaCGCGCGCGUGGaguaaaGGU----UGAg -5'
6377 5' -53.5 NC_001847.1 + 82571 0.67 0.916704
Target:  5'- -gGC-CGC-CGCCUCGagcUCCAGCUCu -3'
miRNA:   3'- gaCGcGCGcGUGGAGUaa-AGGUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 114875 0.67 0.910615
Target:  5'- -cGCGCgGCGCcgACCUCGccgUCUcGCUCu -3'
miRNA:   3'- gaCGCG-CGCG--UGGAGUaa-AGGuUGAG- -5'
6377 5' -53.5 NC_001847.1 + 40948 0.67 0.910615
Target:  5'- -cGCGCGCaGCGCCUCGaacugCCcGCg- -3'
miRNA:   3'- gaCGCGCG-CGUGGAGUaaa--GGuUGag -5'
6377 5' -53.5 NC_001847.1 + 127089 0.67 0.910615
Target:  5'- uCUGCGCGCGgGCCgcgCGgcuuugggUCCAccggGCUg -3'
miRNA:   3'- -GACGCGCGCgUGGa--GUaa------AGGU----UGAg -5'
6377 5' -53.5 NC_001847.1 + 58022 0.67 0.910615
Target:  5'- -cGCGCGCGCGCCUugaagCAgccCCGccGCUa -3'
miRNA:   3'- gaCGCGCGCGUGGA-----GUaaaGGU--UGAg -5'
6377 5' -53.5 NC_001847.1 + 56729 0.67 0.910615
Target:  5'- -aGCGCGCGCGCCagCAgcgcgCCcGCa- -3'
miRNA:   3'- gaCGCGCGCGUGGa-GUaaa--GGuUGag -5'
6377 5' -53.5 NC_001847.1 + 96554 0.67 0.922538
Target:  5'- -cGCGCGCGCucaacgccaggaGCCUCcgcggcUCCGGCa- -3'
miRNA:   3'- gaCGCGCGCG------------UGGAGuaa---AGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 90451 0.67 0.928116
Target:  5'- -aGCGCGCGguCCgcgCGgcccaUCCGcgGCUCg -3'
miRNA:   3'- gaCGCGCGCguGGa--GUaa---AGGU--UGAG- -5'
6377 5' -53.5 NC_001847.1 + 35462 0.66 0.933439
Target:  5'- -cGCGcCGCGCGCCgCAaagCCAGCc- -3'
miRNA:   3'- gaCGC-GCGCGUGGaGUaaaGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 131650 0.66 0.933439
Target:  5'- -aGCuCGCGCGgCUCAUgugCgAGCUCu -3'
miRNA:   3'- gaCGcGCGCGUgGAGUAaa-GgUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 100446 0.66 0.933439
Target:  5'- -cGCgGCGCGCAaguCCUCGcg-CCAgcGCUCc -3'
miRNA:   3'- gaCG-CGCGCGU---GGAGUaaaGGU--UGAG- -5'
6377 5' -53.5 NC_001847.1 + 100310 0.66 0.933439
Target:  5'- gCUGCGCGCuCGCCUCcagcgCCcGgUCg -3'
miRNA:   3'- -GACGCGCGcGUGGAGuaaa-GGuUgAG- -5'
6377 5' -53.5 NC_001847.1 + 43271 0.66 0.933439
Target:  5'- gCUGCGCGUccgGCGCUUCGgcUUCCugaUCg -3'
miRNA:   3'- -GACGCGCG---CGUGGAGUa-AAGGuugAG- -5'
6377 5' -53.5 NC_001847.1 + 118688 0.66 0.932918
Target:  5'- uCUGCGcCGCGgGCCUCGUcguaguuUUCguAgUCg -3'
miRNA:   3'- -GACGC-GCGCgUGGAGUA-------AAGguUgAG- -5'
6377 5' -53.5 NC_001847.1 + 80868 0.67 0.928116
Target:  5'- -cGCGCGgaugaGCGCCUCGag-CC-GCUCg -3'
miRNA:   3'- gaCGCGCg----CGUGGAGUaaaGGuUGAG- -5'
6377 5' -53.5 NC_001847.1 + 12323 0.67 0.928116
Target:  5'- -gGUGgGCGCGCC-Cg---CCGGCUCg -3'
miRNA:   3'- gaCGCgCGCGUGGaGuaaaGGUUGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.