miRNA display CGI


Results 21 - 40 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6377 5' -53.5 NC_001847.1 + 51209 0.66 0.947877
Target:  5'- --cCGCGCGCACUUCGagcgggCCcuGCUCg -3'
miRNA:   3'- gacGCGCGCGUGGAGUaaa---GGu-UGAG- -5'
6377 5' -53.5 NC_001847.1 + 115883 0.66 0.947877
Target:  5'- gCUGCGCcgccggcuCGCGCCgcuuggCCGGCUCg -3'
miRNA:   3'- -GACGCGc-------GCGUGGaguaaaGGUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 781 0.66 0.947877
Target:  5'- -gGCG-GCGCcgGCCUCGUcgucgUCCGACg- -3'
miRNA:   3'- gaCGCgCGCG--UGGAGUAa----AGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 16184 0.66 0.946985
Target:  5'- -cGCGUaGCGCACCUCGacgggcuGCUCg -3'
miRNA:   3'- gaCGCG-CGCGUGGAGUaaaggu-UGAG- -5'
6377 5' -53.5 NC_001847.1 + 2199 0.66 0.946535
Target:  5'- gUGCGgGCGCACCUCAaacaugcgguagaggUCgCGGC-Cg -3'
miRNA:   3'- gACGCgCGCGUGGAGUaa-------------AG-GUUGaG- -5'
6377 5' -53.5 NC_001847.1 + 36568 0.66 0.946083
Target:  5'- -gGCGcCGCGCGCCUaccuggacgCCGACg- -3'
miRNA:   3'- gaCGC-GCGCGUGGAguaaa----GGUUGag -5'
6377 5' -53.5 NC_001847.1 + 78137 0.66 0.943317
Target:  5'- -cGgGCGCGCGCCggcc-UgCGGCUCa -3'
miRNA:   3'- gaCgCGCGCGUGGaguaaAgGUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 115471 0.66 0.943317
Target:  5'- ---gGCGCGCACCcggucgcaGUUUCCGGCg- -3'
miRNA:   3'- gacgCGCGCGUGGag------UAAAGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 59913 0.66 0.943317
Target:  5'- -cGCGCGCGCGCggCGagagCCGGCg- -3'
miRNA:   3'- gaCGCGCGCGUGgaGUaaa-GGUUGag -5'
6377 5' -53.5 NC_001847.1 + 82882 0.66 0.943317
Target:  5'- gUGCGgGCGCGCCgCAg--CCAAg-- -3'
miRNA:   3'- gACGCgCGCGUGGaGUaaaGGUUgag -5'
6377 5' -53.5 NC_001847.1 + 52069 0.66 0.943317
Target:  5'- gUGgGCGgGCACCUUcgccgCCAGCa- -3'
miRNA:   3'- gACgCGCgCGUGGAGuaaa-GGUUGag -5'
6377 5' -53.5 NC_001847.1 + 98452 0.66 0.943317
Target:  5'- -aGCGCGUGuCGCguguagggCAUggCCAGCUCg -3'
miRNA:   3'- gaCGCGCGC-GUGga------GUAaaGGUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 106586 0.66 0.943317
Target:  5'- -gGCGC-CGUGuCCUCGUcgUCUGGCUCg -3'
miRNA:   3'- gaCGCGcGCGU-GGAGUAa-AGGUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 104239 0.66 0.943317
Target:  5'- -cGCcgGCGCGCGCCUCAc--CgGGCUg -3'
miRNA:   3'- gaCG--CGCGCGUGGAGUaaaGgUUGAg -5'
6377 5' -53.5 NC_001847.1 + 1585 0.66 0.943317
Target:  5'- -cGCGCcaGCGCGCCgcUCGgg-CCAGCg- -3'
miRNA:   3'- gaCGCG--CGCGUGG--AGUaaaGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 104398 0.66 0.943317
Target:  5'- -cGCGCcaGCGCGCCgcUCGgg-CCAGCg- -3'
miRNA:   3'- gaCGCG--CGCGUGG--AGUaaaGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 67413 0.66 0.943317
Target:  5'- -gGCGCGUGUGCCgagaggCCAgGCUCa -3'
miRNA:   3'- gaCGCGCGCGUGGaguaaaGGU-UGAG- -5'
6377 5' -53.5 NC_001847.1 + 97308 0.66 0.943317
Target:  5'- -gGgGCGCGUGCCUCcg-UCCGAg-- -3'
miRNA:   3'- gaCgCGCGCGUGGAGuaaAGGUUgag -5'
6377 5' -53.5 NC_001847.1 + 81710 0.66 0.938998
Target:  5'- -gGCGCGCGCGCCgguggaagcggcacgCGcccUCCAGCc- -3'
miRNA:   3'- gaCGCGCGCGUGGa--------------GUaa-AGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 131165 0.66 0.938505
Target:  5'- -cGCGCugGCGCugCUCAcggcCCAcCUCg -3'
miRNA:   3'- gaCGCG--CGCGugGAGUaaa-GGUuGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.