miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6378 3' -50.8 NC_001847.1 + 79578 0.66 0.994316
Target:  5'- cGGgcUCGCGGCcucuUCGGgcGGGGGCgccgGGg -3'
miRNA:   3'- -UCaaAGCGCUGc---AGCU--UCUCCGaa--CC- -5'
6378 3' -50.8 NC_001847.1 + 103156 0.66 0.994316
Target:  5'- aGGUccUCGCGGC-UCGAGGGcGGCguccacgGGg -3'
miRNA:   3'- -UCAa-AGCGCUGcAGCUUCU-CCGaa-----CC- -5'
6378 3' -50.8 NC_001847.1 + 69465 0.66 0.994316
Target:  5'- ----gCGCGGCGgCGgcGGGGCUccugcUGGc -3'
miRNA:   3'- ucaaaGCGCUGCaGCuuCUCCGA-----ACC- -5'
6378 3' -50.8 NC_001847.1 + 72596 0.66 0.99342
Target:  5'- ----cCGCGGCGgcaGAAGGGGCa--- -3'
miRNA:   3'- ucaaaGCGCUGCag-CUUCUCCGaacc -5'
6378 3' -50.8 NC_001847.1 + 120849 0.66 0.99342
Target:  5'- cGGggcCGCGACGcCGGAGAGGg---- -3'
miRNA:   3'- -UCaaaGCGCUGCaGCUUCUCCgaacc -5'
6378 3' -50.8 NC_001847.1 + 34297 0.66 0.992414
Target:  5'- ---cUCGCGGcCGUCagcGAGGCUUcGGg -3'
miRNA:   3'- ucaaAGCGCU-GCAGcuuCUCCGAA-CC- -5'
6378 3' -50.8 NC_001847.1 + 8555 0.66 0.991289
Target:  5'- cGUcgUCGuCGACGgCGAuGAGGCgaGGc -3'
miRNA:   3'- uCAa-AGC-GCUGCaGCUuCUCCGaaCC- -5'
6378 3' -50.8 NC_001847.1 + 114586 0.66 0.990927
Target:  5'- ---cUCGCGcCGggagCGGgaacuuucaccagcAGGGGCUUGGa -3'
miRNA:   3'- ucaaAGCGCuGCa---GCU--------------UCUCCGAACC- -5'
6378 3' -50.8 NC_001847.1 + 11109 0.66 0.990036
Target:  5'- cGGcgUCGUGGCGcUgGAGGAcGGCUucuUGGa -3'
miRNA:   3'- -UCaaAGCGCUGC-AgCUUCU-CCGA---ACC- -5'
6378 3' -50.8 NC_001847.1 + 16577 0.66 0.990036
Target:  5'- cGGgacaGCGGgGUCGggGcGGCgUGGg -3'
miRNA:   3'- -UCaaagCGCUgCAGCuuCuCCGaACC- -5'
6378 3' -50.8 NC_001847.1 + 102672 0.66 0.990036
Target:  5'- ----cCGCGAgGgCGggGGGGCggGGc -3'
miRNA:   3'- ucaaaGCGCUgCaGCuuCUCCGaaCC- -5'
6378 3' -50.8 NC_001847.1 + 92205 0.67 0.987111
Target:  5'- ----gCGCGGCGUCGGcc--GCUUGGg -3'
miRNA:   3'- ucaaaGCGCUGCAGCUucucCGAACC- -5'
6378 3' -50.8 NC_001847.1 + 124668 0.67 0.987111
Target:  5'- gAGgacaGCGACGaCGAGGAGGU--GGa -3'
miRNA:   3'- -UCaaagCGCUGCaGCUUCUCCGaaCC- -5'
6378 3' -50.8 NC_001847.1 + 21855 0.67 0.987111
Target:  5'- gAGgacaGCGACGaCGAGGAGGU--GGa -3'
miRNA:   3'- -UCaaagCGCUGCaGCUUCUCCGaaCC- -5'
6378 3' -50.8 NC_001847.1 + 13306 0.67 0.98542
Target:  5'- ---cUCGCGGuCGUCGAGGcagacGGGCUccGGc -3'
miRNA:   3'- ucaaAGCGCU-GCAGCUUC-----UCCGAa-CC- -5'
6378 3' -50.8 NC_001847.1 + 33540 0.67 0.983565
Target:  5'- cGGg--CGCgGGCGcCGAAGAGGCg--- -3'
miRNA:   3'- -UCaaaGCG-CUGCaGCUUCUCCGaacc -5'
6378 3' -50.8 NC_001847.1 + 30427 0.67 0.983565
Target:  5'- ---cUCGUGGCGggCGcGGAGGCgccgGGg -3'
miRNA:   3'- ucaaAGCGCUGCa-GCuUCUCCGaa--CC- -5'
6378 3' -50.8 NC_001847.1 + 73727 0.67 0.981537
Target:  5'- ----cCGCgGGCGUCGAGGGccGGCU-GGa -3'
miRNA:   3'- ucaaaGCG-CUGCAGCUUCU--CCGAaCC- -5'
6378 3' -50.8 NC_001847.1 + 99803 0.67 0.981537
Target:  5'- uGUggUGCGGgGUCGGAGcGGCcgGGg -3'
miRNA:   3'- uCAaaGCGCUgCAGCUUCuCCGaaCC- -5'
6378 3' -50.8 NC_001847.1 + 15151 0.67 0.981537
Target:  5'- ----cUGCG-CGUCGggGccGCUUGGa -3'
miRNA:   3'- ucaaaGCGCuGCAGCuuCucCGAACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.