miRNA display CGI


Results 21 - 40 of 373 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6378 5' -63.6 NC_001847.1 + 72137 0.66 0.556822
Target:  5'- cGCGGCGCgugCUgCAGCaUGGGCGUGc- -3'
miRNA:   3'- cCGCUGCG---GAgGUCGcACCCGCGCca -5'
6378 5' -63.6 NC_001847.1 + 43219 0.66 0.556822
Target:  5'- -uCGGCGCCguugcCCGGUGgcgguggGGGCGCGcGg -3'
miRNA:   3'- ccGCUGCGGa----GGUCGCa------CCCGCGC-Ca -5'
6378 5' -63.6 NC_001847.1 + 119080 0.66 0.556822
Target:  5'- aGGCGcccagcagagGCGCCgcggCCGccGCG-GGGCgGCGGg -3'
miRNA:   3'- -CCGC----------UGCGGa---GGU--CGCaCCCG-CGCCa -5'
6378 5' -63.6 NC_001847.1 + 15785 0.66 0.556822
Target:  5'- cGGCGgcaaGCGCCgCgCGGCGgGaGGCgGCGGUg -3'
miRNA:   3'- -CCGC----UGCGGaG-GUCGCaC-CCG-CGCCA- -5'
6378 5' -63.6 NC_001847.1 + 19745 0.66 0.556822
Target:  5'- cGGCGG-GCCgcuUAGCGggaaggcgGGGUGCGGg -3'
miRNA:   3'- -CCGCUgCGGag-GUCGCa-------CCCGCGCCa -5'
6378 5' -63.6 NC_001847.1 + 84617 0.66 0.556822
Target:  5'- uGCGuCGCCUUCgAGCG-GGGCcaugccGCGGc -3'
miRNA:   3'- cCGCuGCGGAGG-UCGCaCCCG------CGCCa -5'
6378 5' -63.6 NC_001847.1 + 116552 0.66 0.556822
Target:  5'- aGGCGACGUgUgCCugGGCGacuuuGGCGCGGc -3'
miRNA:   3'- -CCGCUGCGgA-GG--UCGCac---CCGCGCCa -5'
6378 5' -63.6 NC_001847.1 + 13130 0.66 0.555865
Target:  5'- gGGCGGCGCCgcgCCgccugccgcggccGGCGguUGGGCuGCuGGc -3'
miRNA:   3'- -CCGCUGCGGa--GG-------------UCGC--ACCCG-CG-CCa -5'
6378 5' -63.6 NC_001847.1 + 97077 0.66 0.552995
Target:  5'- cGGCGGcCGCCgcgcgcagcuuagCC-GCG-GcGGCGCGGUu -3'
miRNA:   3'- -CCGCU-GCGGa------------GGuCGCaC-CCGCGCCA- -5'
6378 5' -63.6 NC_001847.1 + 7860 0.66 0.55013
Target:  5'- cGGUGGCGCCUgcagaggcggccgCCAcaaaaccaccuagccGCGcgGGGCGCGcGg -3'
miRNA:   3'- -CCGCUGCGGA-------------GGU---------------CGCa-CCCGCGC-Ca -5'
6378 5' -63.6 NC_001847.1 + 32156 0.66 0.547269
Target:  5'- cGCGcACGCCgcgaCGGCGUGcGCgGCGGa -3'
miRNA:   3'- cCGC-UGCGGag--GUCGCACcCG-CGCCa -5'
6378 5' -63.6 NC_001847.1 + 84784 0.66 0.547269
Target:  5'- gGGCGACGCCggCCAGCGccaGCuuuacccuaGCGGc -3'
miRNA:   3'- -CCGCUGCGGa-GGUCGCaccCG---------CGCCa -5'
6378 5' -63.6 NC_001847.1 + 5399 0.66 0.547269
Target:  5'- cGGCGGCacagGCCgcgcgCuCAGUGaGGaGCGCGGUu -3'
miRNA:   3'- -CCGCUG----CGGa----G-GUCGCaCC-CGCGCCA- -5'
6378 5' -63.6 NC_001847.1 + 23425 0.66 0.547269
Target:  5'- cGGCGGgGCgUCCGGgGUcgucggcgGGGCGUccGGg -3'
miRNA:   3'- -CCGCUgCGgAGGUCgCA--------CCCGCG--CCa -5'
6378 5' -63.6 NC_001847.1 + 126238 0.66 0.547269
Target:  5'- cGGCGGgGCgUCCGGgGUcgucggcgGGGCGUccGGg -3'
miRNA:   3'- -CCGCUgCGgAGGUCgCA--------CCCGCG--CCa -5'
6378 5' -63.6 NC_001847.1 + 73514 0.66 0.547269
Target:  5'- cGGCcaagGAcCGCUgcaugagCCGGCugauugcggagGUGGGCGCGGg -3'
miRNA:   3'- -CCG----CU-GCGGa------GGUCG-----------CACCCGCGCCa -5'
6378 5' -63.6 NC_001847.1 + 66768 0.66 0.547269
Target:  5'- gGGCacgaaGCGCCgacguuuucgCCGGCGUacgucuGGGCGuCGGUa -3'
miRNA:   3'- -CCGc----UGCGGa---------GGUCGCA------CCCGC-GCCA- -5'
6378 5' -63.6 NC_001847.1 + 57652 0.66 0.547269
Target:  5'- gGGCcugGGCGCCgUCgGGCaggcgGUGGGCaCGGUg -3'
miRNA:   3'- -CCG---CUGCGG-AGgUCG-----CACCCGcGCCA- -5'
6378 5' -63.6 NC_001847.1 + 120988 0.66 0.547269
Target:  5'- cGGcCGuCGCC-CUAGCGgccgcccaGGCGCGGg -3'
miRNA:   3'- -CC-GCuGCGGaGGUCGCac------CCGCGCCa -5'
6378 5' -63.6 NC_001847.1 + 54697 0.66 0.547269
Target:  5'- cGGCGGCGCC-CgCGGgGaGGacgacGCGCGGg -3'
miRNA:   3'- -CCGCUGCGGaG-GUCgCaCC-----CGCGCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.