miRNA display CGI


Results 101 - 120 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6379 5' -56.9 NC_001847.1 + 128714 0.68 0.793321
Target:  5'- aGCgGGGUGCgGGGUGcGAgGGGGAGgGGg -3'
miRNA:   3'- -CG-CUCACGgCUCGC-CUgCUCCUUgCU- -5'
6379 5' -56.9 NC_001847.1 + 113127 0.68 0.75641
Target:  5'- aCGAGgagGaCGAggagGCGGACGAGGAGgGGg -3'
miRNA:   3'- cGCUCa--CgGCU----CGCCUGCUCCUUgCU- -5'
6379 5' -56.9 NC_001847.1 + 105110 0.68 0.75641
Target:  5'- gGCGGGgccGCCGGGCGGcAUGGGccccagcacgcGGGCGGg -3'
miRNA:   3'- -CGCUCa--CGGCUCGCC-UGCUC-----------CUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 74992 0.68 0.75641
Target:  5'- gGCGccaggcucAGUccGCCG-GCGGGCGGGGGGCc- -3'
miRNA:   3'- -CGC--------UCA--CGGCuCGCCUGCUCCUUGcu -5'
6379 5' -56.9 NC_001847.1 + 2297 0.68 0.75641
Target:  5'- gGCGGGgccGCCGGGCGGcAUGGGccccagcacgcGGGCGGg -3'
miRNA:   3'- -CGCUCa--CGGCUCGCC-UGCUC-----------CUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 10314 0.68 0.75641
Target:  5'- aCGAGgagGaCGAggagGCGGACGAGGAGgGGg -3'
miRNA:   3'- cGCUCa--CgGCU----CGCCUGCUCCUUgCU- -5'
6379 5' -56.9 NC_001847.1 + 96631 0.68 0.764885
Target:  5'- cGCGGGgGCCG-GCGGguacgcgucgugcGCGGGGGccgGCGGg -3'
miRNA:   3'- -CGCUCaCGGCuCGCC-------------UGCUCCU---UGCU- -5'
6379 5' -56.9 NC_001847.1 + 21908 0.68 0.784285
Target:  5'- -gGAGacgGCCGAggccGCGGGCGAGGcgGAgGAg -3'
miRNA:   3'- cgCUCa--CGGCU----CGCCUGCUCC--UUgCU- -5'
6379 5' -56.9 NC_001847.1 + 55368 0.68 0.765821
Target:  5'- cGCGGGcGCCgGAGaCGGucgGCGAGGAcaGCGu -3'
miRNA:   3'- -CGCUCaCGG-CUC-GCC---UGCUCCU--UGCu -5'
6379 5' -56.9 NC_001847.1 + 79566 0.68 0.783374
Target:  5'- cGCGGGgggcGCCGGGCucgcggccucuucGGGCG-GGGGCGc -3'
miRNA:   3'- -CGCUCa---CGGCUCG-------------CCUGCuCCUUGCu -5'
6379 5' -56.9 NC_001847.1 + 72994 0.68 0.775115
Target:  5'- cGCGGGagcugGCCGcagcGCGGGCGcGGAACc- -3'
miRNA:   3'- -CGCUCa----CGGCu---CGCCUGCuCCUUGcu -5'
6379 5' -56.9 NC_001847.1 + 115668 0.69 0.746892
Target:  5'- cGCGuccGUGCgggUGAGCGGcuGCGcGGGGGCGAg -3'
miRNA:   3'- -CGCu--CACG---GCUCGCC--UGC-UCCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 29667 0.69 0.727569
Target:  5'- aCGGGU-CCGAGgcggaGGACGGGGAggACGGg -3'
miRNA:   3'- cGCUCAcGGCUCg----CCUGCUCCU--UGCU- -5'
6379 5' -56.9 NC_001847.1 + 133589 0.69 0.727569
Target:  5'- cGCGGGcGCgcuauCGGGCGGGCGGGcuuGGGCGGc -3'
miRNA:   3'- -CGCUCaCG-----GCUCGCCUGCUC---CUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 58387 0.69 0.727569
Target:  5'- aGCGGGUGCCG-GCGGGC-AGcAGCu- -3'
miRNA:   3'- -CGCUCACGGCuCGCCUGcUCcUUGcu -5'
6379 5' -56.9 NC_001847.1 + 37029 0.69 0.744017
Target:  5'- aGCGGGgcGCCGGGCucgcacucuagccuGGGCuGGGGGCGGc -3'
miRNA:   3'- -CGCUCa-CGGCUCG--------------CCUGcUCCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 46341 0.69 0.717782
Target:  5'- cGCGGG-GCCGcgucGGCGGcauCGGGGGGCu- -3'
miRNA:   3'- -CGCUCaCGGC----UCGCCu--GCUCCUUGcu -5'
6379 5' -56.9 NC_001847.1 + 12935 0.69 0.746892
Target:  5'- cGCGcGUGUCGucguGCGGugGGGcGGCGGg -3'
miRNA:   3'- -CGCuCACGGCu---CGCCugCUCcUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 84450 0.69 0.746892
Target:  5'- uUGAcGUGCgCGGGgGGugG-GGAGCGGg -3'
miRNA:   3'- cGCU-CACG-GCUCgCCugCuCCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 22714 0.69 0.717782
Target:  5'- gGCGAGggaUCGGGgGGAUG-GGGGCGAg -3'
miRNA:   3'- -CGCUCac-GGCUCgCCUGCuCCUUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.