Results 121 - 140 of 194 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
6379 | 5' | -56.9 | NC_001847.1 | + | 134920 | 0.69 | 0.746892 |
Target: 5'- cGCGAGgcccggGCuCGGGCccccGGGCGccGGGGGCGGg -3' miRNA: 3'- -CGCUCa-----CG-GCUCG----CCUGC--UCCUUGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 84450 | 0.69 | 0.746892 |
Target: 5'- uUGAcGUGCgCGGGgGGugG-GGAGCGGg -3' miRNA: 3'- cGCU-CACG-GCUCgCCugCuCCUUGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 34461 | 0.69 | 0.698002 |
Target: 5'- cGCG-GUgGCCGccGGCGG-CGAGGAuGCGGa -3' miRNA: 3'- -CGCuCA-CGGC--UCGCCuGCUCCU-UGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 22714 | 0.69 | 0.717782 |
Target: 5'- gGCGAGggaUCGGGgGGAUG-GGGGCGAg -3' miRNA: 3'- -CGCUCac-GGCUCgCCUGCuCCUUGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 32107 | 0.69 | 0.746892 |
Target: 5'- cGCGAGgcccggGCuCGGGCccccGGGCGccGGGGGCGGg -3' miRNA: 3'- -CGCUCa-----CG-GCUCG----CCUGC--UCCUUGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 115668 | 0.69 | 0.746892 |
Target: 5'- cGCGuccGUGCgggUGAGCGGcuGCGcGGGGGCGAg -3' miRNA: 3'- -CGCu--CACG---GCUCGCC--UGC-UCCUUGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 37029 | 0.69 | 0.744017 |
Target: 5'- aGCGGGgcGCCGGGCucgcacucuagccuGGGCuGGGGGCGGc -3' miRNA: 3'- -CGCUCa-CGGCUCG--------------CCUGcUCCUUGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 58387 | 0.69 | 0.727569 |
Target: 5'- aGCGGGUGCCG-GCGGGC-AGcAGCu- -3' miRNA: 3'- -CGCUCACGGCuCGCCUGcUCcUUGcu -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 133589 | 0.69 | 0.727569 |
Target: 5'- cGCGGGcGCgcuauCGGGCGGGCGGGcuuGGGCGGc -3' miRNA: 3'- -CGCUCaCG-----GCUCGCCUGCUC---CUUGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 29667 | 0.69 | 0.727569 |
Target: 5'- aCGGGU-CCGAGgcggaGGACGGGGAggACGGg -3' miRNA: 3'- cGCUCAcGGCUCg----CCUGCUCCU--UGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 62912 | 0.69 | 0.717782 |
Target: 5'- cGCGGGUGCucggggcccgCGGGCGGcuccucguCGGGGGGCa- -3' miRNA: 3'- -CGCUCACG----------GCUCGCCu-------GCUCCUUGcu -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 46341 | 0.69 | 0.717782 |
Target: 5'- cGCGGG-GCCGcgucGGCGGcauCGGGGGGCu- -3' miRNA: 3'- -CGCUCaCGGC----UCGCCu--GCUCCUUGcu -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 12935 | 0.69 | 0.746892 |
Target: 5'- cGCGcGUGUCGucguGCGGugGGGcGGCGGg -3' miRNA: 3'- -CGCuCACGGCu---CGCCugCUCcUUGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 76737 | 0.7 | 0.678006 |
Target: 5'- gGCGGGgaaggacgGUCGGGCgcucGGGCGGGGGGCa- -3' miRNA: 3'- -CGCUCa-------CGGCUCG----CCUGCUCCUUGcu -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 18114 | 0.7 | 0.647757 |
Target: 5'- gGCGAGcccccGCCGGGCaGAC-AGGAGCGc -3' miRNA: 3'- -CGCUCa----CGGCUCGcCUGcUCCUUGCu -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 27267 | 0.7 | 0.654833 |
Target: 5'- cGCGAGaGCCGGaugugaggcugcccGcCGGGCGAGaGGACGGc -3' miRNA: 3'- -CGCUCaCGGCU--------------C-GCCUGCUC-CUUGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 34165 | 0.7 | 0.657863 |
Target: 5'- cGCGAGgcgGCUGAggcgcuGCGGGCcGGGGGCGc -3' miRNA: 3'- -CGCUCa--CGGCU------CGCCUGcUCCUUGCu -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 103228 | 0.7 | 0.667949 |
Target: 5'- cCGAGgGCCcgGGGCGGGCGGGcGGCGGc -3' miRNA: 3'- cGCUCaCGG--CUCGCCUGCUCcUUGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 81577 | 0.7 | 0.667949 |
Target: 5'- cGCGGG-GCCG-GCGGcuACG-GGAGCGu -3' miRNA: 3'- -CGCUCaCGGCuCGCC--UGCuCCUUGCu -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 52 | 0.7 | 0.678006 |
Target: 5'- gGCGcGUGCauugcGGCGGGCG-GGGGCGGg -3' miRNA: 3'- -CGCuCACGgc---UCGCCUGCuCCUUGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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