Results 41 - 60 of 194 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
6379 | 5' | -56.9 | NC_001847.1 | + | 134776 | 0.71 | 0.627517 |
Target: 5'- aGCGAGggagGagGAGCgagGGAgGAGGAGCGAg -3' miRNA: 3'- -CGCUCa---CggCUCG---CCUgCUCCUUGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 27728 | 0.71 | 0.596192 |
Target: 5'- cCGAGcugGCCGAGCuguggcggaugguGGGCGGGGAggacGCGGa -3' miRNA: 3'- cGCUCa--CGGCUCG-------------CCUGCUCCU----UGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 26506 | 0.71 | 0.5972 |
Target: 5'- gGCGGGccUGCCGGGCgcgGGGCcGGGGGCGu -3' miRNA: 3'- -CGCUC--ACGGCUCG---CCUGcUCCUUGCu -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 92088 | 0.71 | 0.60729 |
Target: 5'- cGCGu-UGCCGAuUGGAUGAGGAAgGAg -3' miRNA: 3'- -CGCucACGGCUcGCCUGCUCCUUgCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 88315 | 0.7 | 0.667949 |
Target: 5'- gGCGAGgagGaaGAGgaGGACGAGGGGgGAg -3' miRNA: 3'- -CGCUCa--CggCUCg-CCUGCUCCUUgCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 18114 | 0.7 | 0.647757 |
Target: 5'- gGCGAGcccccGCCGGGCaGAC-AGGAGCGc -3' miRNA: 3'- -CGCUCa----CGGCUCGcCUGcUCCUUGCu -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 27267 | 0.7 | 0.654833 |
Target: 5'- cGCGAGaGCCGGaugugaggcugcccGcCGGGCGAGaGGACGGc -3' miRNA: 3'- -CGCUCaCGGCU--------------C-GCCUGCUC-CUUGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 34165 | 0.7 | 0.657863 |
Target: 5'- cGCGAGgcgGCUGAggcgcuGCGGGCcGGGGGCGc -3' miRNA: 3'- -CGCUCa--CGGCU------CGCCUGcUCCUUGCu -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 103228 | 0.7 | 0.667949 |
Target: 5'- cCGAGgGCCcgGGGCGGGCGGGcGGCGGc -3' miRNA: 3'- cGCUCaCGG--CUCGCCUGCUCcUUGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 81577 | 0.7 | 0.667949 |
Target: 5'- cGCGGG-GCCG-GCGGcuACG-GGAGCGu -3' miRNA: 3'- -CGCUCaCGGCuCGCC--UGCuCCUUGCu -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 52 | 0.7 | 0.678006 |
Target: 5'- gGCGcGUGCauugcGGCGGGCG-GGGGCGGg -3' miRNA: 3'- -CGCuCACGgc---UCGCCUGCuCCUUGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 90803 | 0.7 | 0.678006 |
Target: 5'- aGCGAGaGCgaGAGCGGAgCGAgagcaaaggcGGGGCGAg -3' miRNA: 3'- -CGCUCaCGg-CUCGCCU-GCU----------CCUUGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 76737 | 0.7 | 0.678006 |
Target: 5'- gGCGGGgaaggacgGUCGGGCgcucGGGCGGGGGGCa- -3' miRNA: 3'- -CGCUCa-------CGGCUCG----CCUGCUCCUUGcu -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 81244 | 0.7 | 0.667949 |
Target: 5'- gGCGGG-GCCGucGCgaGGACGGGGGGCc- -3' miRNA: 3'- -CGCUCaCGGCu-CG--CCUGCUCCUUGcu -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 415 | 0.7 | 0.667949 |
Target: 5'- cCGAGgGCCcgGGGCGGGCGGGcGGCGGc -3' miRNA: 3'- cGCUCaCGG--CUCGCCUGCUCcUUGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 14333 | 0.7 | 0.667949 |
Target: 5'- gGUGGG-GCCGGGCGuGguggcggcgccuGCGGGGAACGc -3' miRNA: 3'- -CGCUCaCGGCUCGC-C------------UGCUCCUUGCu -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 133714 | 0.7 | 0.667949 |
Target: 5'- aGCGcaaauAGUGCCuGGCGGGCGcGGGGCc- -3' miRNA: 3'- -CGC-----UCACGGcUCGCCUGCuCCUUGcu -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 95153 | 0.7 | 0.657863 |
Target: 5'- uGgGGGUGCCG-GCauGGCGGGGGGCGc -3' miRNA: 3'- -CgCUCACGGCuCGc-CUGCUCCUUGCu -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 16963 | 0.7 | 0.647757 |
Target: 5'- -aGAGgGCCGGGCGGcagauUGAGGGGCa- -3' miRNA: 3'- cgCUCaCGGCUCGCCu----GCUCCUUGcu -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 33864 | 0.7 | 0.667949 |
Target: 5'- cGCGGGcUGggGGGCGGGCagugagGAGGGACGAg -3' miRNA: 3'- -CGCUC-ACggCUCGCCUG------CUCCUUGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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