miRNA display CGI


Results 61 - 80 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6379 5' -56.9 NC_001847.1 + 76737 0.7 0.678006
Target:  5'- gGCGGGgaaggacgGUCGGGCgcucGGGCGGGGGGCa- -3'
miRNA:   3'- -CGCUCa-------CGGCUCG----CCUGCUCCUUGcu -5'
6379 5' -56.9 NC_001847.1 + 34461 0.69 0.698002
Target:  5'- cGCG-GUgGCCGccGGCGG-CGAGGAuGCGGa -3'
miRNA:   3'- -CGCuCA-CGGC--UCGCCuGCUCCU-UGCU- -5'
6379 5' -56.9 NC_001847.1 + 45142 0.69 0.707924
Target:  5'- cCGAgGUGCCG-GCGGugagcGCGGGGGACc- -3'
miRNA:   3'- cGCU-CACGGCuCGCC-----UGCUCCUUGcu -5'
6379 5' -56.9 NC_001847.1 + 122146 0.69 0.707924
Target:  5'- cGCGcAGggcGCCGcGCgGGACGAGGAgagggaaccaGCGAc -3'
miRNA:   3'- -CGC-UCa--CGGCuCG-CCUGCUCCU----------UGCU- -5'
6379 5' -56.9 NC_001847.1 + 125527 0.69 0.717782
Target:  5'- gGCGAGggaUCGGGgGGAUG-GGGGCGAg -3'
miRNA:   3'- -CGCUCac-GGCUCgCCUGCuCCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 22714 0.69 0.717782
Target:  5'- gGCGAGggaUCGGGgGGAUG-GGGGCGAg -3'
miRNA:   3'- -CGCUCac-GGCUCgCCUGCuCCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 62912 0.69 0.717782
Target:  5'- cGCGGGUGCucggggcccgCGGGCGGcuccucguCGGGGGGCa- -3'
miRNA:   3'- -CGCUCACG----------GCUCGCCu-------GCUCCUUGcu -5'
6379 5' -56.9 NC_001847.1 + 46341 0.69 0.717782
Target:  5'- cGCGGG-GCCGcgucGGCGGcauCGGGGGGCu- -3'
miRNA:   3'- -CGCUCaCGGC----UCGCCu--GCUCCUUGcu -5'
6379 5' -56.9 NC_001847.1 + 29667 0.69 0.727569
Target:  5'- aCGGGU-CCGAGgcggaGGACGGGGAggACGGg -3'
miRNA:   3'- cGCUCAcGGCUCg----CCUGCUCCU--UGCU- -5'
6379 5' -56.9 NC_001847.1 + 133589 0.69 0.727569
Target:  5'- cGCGGGcGCgcuauCGGGCGGGCGGGcuuGGGCGGc -3'
miRNA:   3'- -CGCUCaCG-----GCUCGCCUGCUC---CUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 58387 0.69 0.727569
Target:  5'- aGCGGGUGCCG-GCGGGC-AGcAGCu- -3'
miRNA:   3'- -CGCUCACGGCuCGCCUGcUCcUUGcu -5'
6379 5' -56.9 NC_001847.1 + 67209 0.69 0.727569
Target:  5'- ---cGUGCCGAGCGG-CGGGcGcGCGGu -3'
miRNA:   3'- cgcuCACGGCUCGCCuGCUC-CuUGCU- -5'
6379 5' -56.9 NC_001847.1 + 132480 0.69 0.727569
Target:  5'- aCGGGU-CCGAGgcggaGGACGGGGAggACGGg -3'
miRNA:   3'- cGCUCAcGGCUCg----CCUGCUCCU--UGCU- -5'
6379 5' -56.9 NC_001847.1 + 116073 0.69 0.737275
Target:  5'- aGCGGG-GCCGAcGaCGG-CGAcuGGGACGAc -3'
miRNA:   3'- -CGCUCaCGGCU-C-GCCuGCU--CCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 57145 0.69 0.737275
Target:  5'- cGUGAcguacUGCCacGAGCuGGGCGAGGGGCGc -3'
miRNA:   3'- -CGCUc----ACGG--CUCG-CCUGCUCCUUGCu -5'
6379 5' -56.9 NC_001847.1 + 37029 0.69 0.744017
Target:  5'- aGCGGGgcGCCGGGCucgcacucuagccuGGGCuGGGGGCGGc -3'
miRNA:   3'- -CGCUCa-CGGCUCG--------------CCUGcUCCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 84450 0.69 0.746892
Target:  5'- uUGAcGUGCgCGGGgGGugG-GGAGCGGg -3'
miRNA:   3'- cGCU-CACG-GCUCgCCugCuCCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 12935 0.69 0.746892
Target:  5'- cGCGcGUGUCGucguGCGGugGGGcGGCGGg -3'
miRNA:   3'- -CGCuCACGGCu---CGCCugCUCcUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 115668 0.69 0.746892
Target:  5'- cGCGuccGUGCgggUGAGCGGcuGCGcGGGGGCGAg -3'
miRNA:   3'- -CGCu--CACG---GCUCGCC--UGC-UCCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 32107 0.69 0.746892
Target:  5'- cGCGAGgcccggGCuCGGGCccccGGGCGccGGGGGCGGg -3'
miRNA:   3'- -CGCUCa-----CG-GCUCG----CCUGC--UCCUUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.