miRNA display CGI


Results 81 - 100 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6379 5' -56.9 NC_001847.1 + 12935 0.69 0.746892
Target:  5'- cGCGcGUGUCGucguGCGGugGGGcGGCGGg -3'
miRNA:   3'- -CGCuCACGGCu---CGCCugCUCcUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 134920 0.69 0.746892
Target:  5'- cGCGAGgcccggGCuCGGGCccccGGGCGccGGGGGCGGg -3'
miRNA:   3'- -CGCUCa-----CG-GCUCG----CCUGC--UCCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 55072 0.69 0.746892
Target:  5'- cGCGuuuaUGCUG-GCGGccGCGGGGGGCGGg -3'
miRNA:   3'- -CGCuc--ACGGCuCGCC--UGCUCCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 10314 0.68 0.75641
Target:  5'- aCGAGgagGaCGAggagGCGGACGAGGAGgGGg -3'
miRNA:   3'- cGCUCa--CgGCU----CGCCUGCUCCUUgCU- -5'
6379 5' -56.9 NC_001847.1 + 2297 0.68 0.75641
Target:  5'- gGCGGGgccGCCGGGCGGcAUGGGccccagcacgcGGGCGGg -3'
miRNA:   3'- -CGCUCa--CGGCUCGCC-UGCUC-----------CUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 113127 0.68 0.75641
Target:  5'- aCGAGgagGaCGAggagGCGGACGAGGAGgGGg -3'
miRNA:   3'- cGCUCa--CgGCU----CGCCUGCUCCUUgCU- -5'
6379 5' -56.9 NC_001847.1 + 74992 0.68 0.75641
Target:  5'- gGCGccaggcucAGUccGCCG-GCGGGCGGGGGGCc- -3'
miRNA:   3'- -CGC--------UCA--CGGCuCGCCUGCUCCUUGcu -5'
6379 5' -56.9 NC_001847.1 + 105110 0.68 0.75641
Target:  5'- gGCGGGgccGCCGGGCGGcAUGGGccccagcacgcGGGCGGg -3'
miRNA:   3'- -CGCUCa--CGGCUCGCC-UGCUC-----------CUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 96631 0.68 0.764885
Target:  5'- cGCGGGgGCCG-GCGGguacgcgucgugcGCGGGGGccgGCGGg -3'
miRNA:   3'- -CGCUCaCGGCuCGCC-------------UGCUCCU---UGCU- -5'
6379 5' -56.9 NC_001847.1 + 99767 0.68 0.765821
Target:  5'- aGUGAGccGCCGcGGCuuuGGGCGGGGGGCa- -3'
miRNA:   3'- -CGCUCa-CGGC-UCG---CCUGCUCCUUGcu -5'
6379 5' -56.9 NC_001847.1 + 55368 0.68 0.765821
Target:  5'- cGCGGGcGCCgGAGaCGGucgGCGAGGAcaGCGu -3'
miRNA:   3'- -CGCUCaCGG-CUC-GCC---UGCUCCU--UGCu -5'
6379 5' -56.9 NC_001847.1 + 82796 0.68 0.775115
Target:  5'- aCGAGUuucugGCCGAggcgGCGGGCGaAGGcGACGGc -3'
miRNA:   3'- cGCUCA-----CGGCU----CGCCUGC-UCC-UUGCU- -5'
6379 5' -56.9 NC_001847.1 + 84234 0.68 0.775115
Target:  5'- cCGGG-GCCGccGCGGGgGAGGAggGCGGc -3'
miRNA:   3'- cGCUCaCGGCu-CGCCUgCUCCU--UGCU- -5'
6379 5' -56.9 NC_001847.1 + 72994 0.68 0.775115
Target:  5'- cGCGGGagcugGCCGcagcGCGGGCGcGGAACc- -3'
miRNA:   3'- -CGCUCa----CGGCu---CGCCUGCuCCUUGcu -5'
6379 5' -56.9 NC_001847.1 + 79566 0.68 0.783374
Target:  5'- cGCGGGgggcGCCGGGCucgcggccucuucGGGCG-GGGGCGc -3'
miRNA:   3'- -CGCUCa---CGGCUCG-------------CCUGCuCCUUGCu -5'
6379 5' -56.9 NC_001847.1 + 92983 0.68 0.784285
Target:  5'- gGCGGcGUGCagccacacgCGAGCGcuggaGGCGAGGAAgGAg -3'
miRNA:   3'- -CGCU-CACG---------GCUCGC-----CUGCUCCUUgCU- -5'
6379 5' -56.9 NC_001847.1 + 52706 0.68 0.784285
Target:  5'- cGCGGGguUGCCGGGaaGACcaagggGAGGAGCGc -3'
miRNA:   3'- -CGCUC--ACGGCUCgcCUG------CUCCUUGCu -5'
6379 5' -56.9 NC_001847.1 + 21908 0.68 0.784285
Target:  5'- -gGAGacgGCCGAggccGCGGGCGAGGcgGAgGAg -3'
miRNA:   3'- cgCUCa--CGGCU----CGCCUGCUCC--UUgCU- -5'
6379 5' -56.9 NC_001847.1 + 8982 0.68 0.784285
Target:  5'- cCGGG-GgCGGGCaGACGGGGGugGGg -3'
miRNA:   3'- cGCUCaCgGCUCGcCUGCUCCUugCU- -5'
6379 5' -56.9 NC_001847.1 + 96338 0.68 0.784285
Target:  5'- gGCGGG-GCCGgcGGCGGcaaugGCGGGGccGGCGGu -3'
miRNA:   3'- -CGCUCaCGGC--UCGCC-----UGCUCC--UUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.