Results 121 - 140 of 194 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6379 | 5' | -56.9 | NC_001847.1 | + | 88549 | 0.67 | 0.810957 |
Target: 5'- cGCGAG-GCCGcGCcGGCGGGGcuGACGc -3' miRNA: 3'- -CGCUCaCGGCuCGcCUGCUCC--UUGCu -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 68796 | 0.67 | 0.810957 |
Target: 5'- gGCGGccGCgCGAGCGGGCcgacggGGGGAACa- -3' miRNA: 3'- -CGCUcaCG-GCUCGCCUG------CUCCUUGcu -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 17240 | 0.67 | 0.810957 |
Target: 5'- cGCGcGUGCCGAGCcuccACGGGGuagccguuGCGGa -3' miRNA: 3'- -CGCuCACGGCUCGcc--UGCUCCu-------UGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 48184 | 0.67 | 0.810957 |
Target: 5'- gGCGuccugcuGUGCCGcgccGGCGGccagggcCGAGGAGCGc -3' miRNA: 3'- -CGCu------CACGGC----UCGCCu------GCUCCUUGCu -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 36988 | 0.67 | 0.819542 |
Target: 5'- aGCGGGcccgcGCCGAGCGG-CGGcGGcGCGc -3' miRNA: 3'- -CGCUCa----CGGCUCGCCuGCU-CCuUGCu -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 130657 | 0.67 | 0.819542 |
Target: 5'- gGCGAGgacGCCGGcGCcagGGACGcgGGGGGCGc -3' miRNA: 3'- -CGCUCa--CGGCU-CG---CCUGC--UCCUUGCu -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 27844 | 0.67 | 0.819542 |
Target: 5'- gGCGAGgacGCCGGcGCcagGGACGcgGGGGGCGc -3' miRNA: 3'- -CGCUCa--CGGCU-CG---CCUGC--UCCUUGCu -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 94502 | 0.67 | 0.819542 |
Target: 5'- cGCGAG-GCgCG-GCGGACGuGGGG-GAa -3' miRNA: 3'- -CGCUCaCG-GCuCGCCUGCuCCUUgCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 119651 | 0.67 | 0.827959 |
Target: 5'- aCGGGgcaGCCGGGCGGGa-GGGcAACGGc -3' miRNA: 3'- cGCUCa--CGGCUCGCCUgcUCC-UUGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 29098 | 0.67 | 0.827959 |
Target: 5'- gGCGAGcacgGCgCGGGCGGcgcGCGAGcGGcugcGCGAg -3' miRNA: 3'- -CGCUCa---CG-GCUCGCC---UGCUC-CU----UGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 69198 | 0.67 | 0.827959 |
Target: 5'- cGCGAGcuccagcGCCuGGGCGuccGCGGGGAACGc -3' miRNA: 3'- -CGCUCa------CGG-CUCGCc--UGCUCCUUGCu -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 69418 | 0.67 | 0.827959 |
Target: 5'- uCGAGcGCCGccccGGCGGGCucuGGGAUGAa -3' miRNA: 3'- cGCUCaCGGC----UCGCCUGcu-CCUUGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 7248 | 0.67 | 0.827959 |
Target: 5'- uCGGGUGgCUGuGCGGGCGcggcGGGGGCa- -3' miRNA: 3'- cGCUCAC-GGCuCGCCUGC----UCCUUGcu -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 33716 | 0.67 | 0.827959 |
Target: 5'- cGCGuG-GCCGAGCug--GGGGAGCGAc -3' miRNA: 3'- -CGCuCaCGGCUCGccugCUCCUUGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 131911 | 0.67 | 0.827959 |
Target: 5'- gGCGAGcacgGCgCGGGCGGcgcGCGAGcGGcugcGCGAg -3' miRNA: 3'- -CGCUCa---CG-GCUCGCC---UGCUC-CU----UGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 63993 | 0.67 | 0.835387 |
Target: 5'- gGCGcucaAGUGCCgcGAGCucuacccGGGCGGcGGGACGGg -3' miRNA: 3'- -CGC----UCACGG--CUCG-------CCUGCU-CCUUGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 19708 | 0.67 | 0.836203 |
Target: 5'- cCGAGcagaGCCGGGCGcuGACGgcaagccggcuGGGGACGAc -3' miRNA: 3'- cGCUCa---CGGCUCGC--CUGC-----------UCCUUGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 25974 | 0.67 | 0.836203 |
Target: 5'- cGCGGGcgGUCagaccaGGGCGGGCGGGcGGGCGc -3' miRNA: 3'- -CGCUCa-CGG------CUCGCCUGCUC-CUUGCu -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 120924 | 0.67 | 0.836203 |
Target: 5'- aCGAGgGCgGGGCGGGCGcGcGGGCGu -3' miRNA: 3'- cGCUCaCGgCUCGCCUGCuC-CUUGCu -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 56684 | 0.67 | 0.836203 |
Target: 5'- cGCGAGU-CCGuGCGcACGAGGuGCa- -3' miRNA: 3'- -CGCUCAcGGCuCGCcUGCUCCuUGcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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