Results 81 - 100 of 194 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6379 | 5' | -56.9 | NC_001847.1 | + | 32906 | 0.68 | 0.802214 |
Target: 5'- gGCGGGgaaGCCGGggccGCGGACGGGaGGAgGc -3' miRNA: 3'- -CGCUCa--CGGCU----CGCCUGCUC-CUUgCu -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 10642 | 0.68 | 0.802214 |
Target: 5'- aGCG-GUGCCu-GgGGACGcGGAGCGc -3' miRNA: 3'- -CGCuCACGGcuCgCCUGCuCCUUGCu -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 59034 | 0.68 | 0.802214 |
Target: 5'- gGCGGGUGCgGcGGCGGAgGAGaGugGu -3' miRNA: 3'- -CGCUCACGgC-UCGCCUgCUCcUugCu -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 97830 | 0.68 | 0.802214 |
Target: 5'- gGCGcGUGCCGccacacggcuAGCacgucGGACGGGGAaagGCGGc -3' miRNA: 3'- -CGCuCACGGC----------UCG-----CCUGCUCCU---UGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 95651 | 0.68 | 0.793321 |
Target: 5'- cGCGGGggGCgGcGCGGgccgcucuggcGCGGGGGGCGGc -3' miRNA: 3'- -CGCUCa-CGgCuCGCC-----------UGCUCCUUGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 95759 | 0.68 | 0.793321 |
Target: 5'- cGCGGGggGCgGcGCGGgccgcucuggcGCGGGGGGCGGc -3' miRNA: 3'- -CGCUCa-CGgCuCGCC-----------UGCUCCUUGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 96380 | 0.68 | 0.793321 |
Target: 5'- gGCGGG-GCCGgcGGCGGcaaugGCGGGGccGGCGGc -3' miRNA: 3'- -CGCUCaCGGC--UCGCC-----UGCUCC--UUGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 28605 | 0.68 | 0.793321 |
Target: 5'- cGCGAGgcgGCCGcgcgcuacgcGGCGGccGCGGGGcccGCGGc -3' miRNA: 3'- -CGCUCa--CGGC----------UCGCC--UGCUCCu--UGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 25901 | 0.68 | 0.793321 |
Target: 5'- aGCgGGGUGCgGGGUGcGAgGGGGAGgGGg -3' miRNA: 3'- -CG-CUCACGgCUCGC-CUgCUCCUUgCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 131418 | 0.68 | 0.793321 |
Target: 5'- cGCGAGgcgGCCGcgcgcuacgcGGCGGccGCGGGGcccGCGGc -3' miRNA: 3'- -CGCUCa--CGGC----------UCGCC--UGCUCCu--UGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 95705 | 0.68 | 0.793321 |
Target: 5'- cGCGGGggGCgGcGCGGgccgcucuggcGCGGGGGGCGGc -3' miRNA: 3'- -CGCUCa-CGgCuCGCC-----------UGCUCCUUGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 128714 | 0.68 | 0.793321 |
Target: 5'- aGCgGGGUGCgGGGUGcGAgGGGGAGgGGg -3' miRNA: 3'- -CG-CUCACGgCUCGC-CUgCUCCUUgCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 92983 | 0.68 | 0.784285 |
Target: 5'- gGCGGcGUGCagccacacgCGAGCGcuggaGGCGAGGAAgGAg -3' miRNA: 3'- -CGCU-CACG---------GCUCGC-----CUGCUCCUUgCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 96338 | 0.68 | 0.784285 |
Target: 5'- gGCGGG-GCCGgcGGCGGcaaugGCGGGGccGGCGGu -3' miRNA: 3'- -CGCUCaCGGC--UCGCC-----UGCUCC--UUGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 8982 | 0.68 | 0.784285 |
Target: 5'- cCGGG-GgCGGGCaGACGGGGGugGGg -3' miRNA: 3'- cGCUCaCgGCUCGcCUGCUCCUugCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 21908 | 0.68 | 0.784285 |
Target: 5'- -gGAGacgGCCGAggccGCGGGCGAGGcgGAgGAg -3' miRNA: 3'- cgCUCa--CGGCU----CGCCUGCUCC--UUgCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 111795 | 0.68 | 0.784285 |
Target: 5'- cCGGG-GgCGGGCaGACGGGGGugGGg -3' miRNA: 3'- cGCUCaCgGCUCGcCUGCUCCUugCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 52706 | 0.68 | 0.784285 |
Target: 5'- cGCGGGguUGCCGGGaaGACcaagggGAGGAGCGc -3' miRNA: 3'- -CGCUC--ACGGCUCgcCUG------CUCCUUGCu -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 102692 | 0.68 | 0.784285 |
Target: 5'- gGCGGGggcagggcGCCGGGCGGGCGGcGAAa-- -3' miRNA: 3'- -CGCUCa-------CGGCUCGCCUGCUcCUUgcu -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 79566 | 0.68 | 0.783374 |
Target: 5'- cGCGGGgggcGCCGGGCucgcggccucuucGGGCG-GGGGCGc -3' miRNA: 3'- -CGCUCa---CGGCUCG-------------CCUGCuCCUUGCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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