miRNA display CGI


Results 141 - 160 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6379 5' -56.9 NC_001847.1 + 88315 0.7 0.667949
Target:  5'- gGCGAGgagGaaGAGgaGGACGAGGGGgGAg -3'
miRNA:   3'- -CGCUCa--CggCUCg-CCUGCUCCUUgCU- -5'
6379 5' -56.9 NC_001847.1 + 33864 0.7 0.667949
Target:  5'- cGCGGGcUGggGGGCGGGCagugagGAGGGACGAg -3'
miRNA:   3'- -CGCUC-ACggCUCGCCUG------CUCCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 415 0.7 0.667949
Target:  5'- cCGAGgGCCcgGGGCGGGCGGGcGGCGGc -3'
miRNA:   3'- cGCUCaCGG--CUCGCCUGCUCcUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 133714 0.7 0.667949
Target:  5'- aGCGcaaauAGUGCCuGGCGGGCGcGGGGCc- -3'
miRNA:   3'- -CGC-----UCACGGcUCGCCUGCuCCUUGcu -5'
6379 5' -56.9 NC_001847.1 + 14333 0.7 0.667949
Target:  5'- gGUGGG-GCCGGGCGuGguggcggcgccuGCGGGGAACGc -3'
miRNA:   3'- -CGCUCaCGGCUCGC-C------------UGCUCCUUGCu -5'
6379 5' -56.9 NC_001847.1 + 95153 0.7 0.657863
Target:  5'- uGgGGGUGCCG-GCauGGCGGGGGGCGc -3'
miRNA:   3'- -CgCUCACGGCuCGc-CUGCUCCUUGCu -5'
6379 5' -56.9 NC_001847.1 + 34165 0.7 0.657863
Target:  5'- cGCGAGgcgGCUGAggcgcuGCGGGCcGGGGGCGc -3'
miRNA:   3'- -CGCUCa--CGGCU------CGCCUGcUCCUUGCu -5'
6379 5' -56.9 NC_001847.1 + 27267 0.7 0.654833
Target:  5'- cGCGAGaGCCGGaugugaggcugcccGcCGGGCGAGaGGACGGc -3'
miRNA:   3'- -CGCUCaCGGCU--------------C-GCCUGCUC-CUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 16963 0.7 0.647757
Target:  5'- -aGAGgGCCGGGCGGcagauUGAGGGGCa- -3'
miRNA:   3'- cgCUCaCGGCUCGCCu----GCUCCUUGcu -5'
6379 5' -56.9 NC_001847.1 + 18114 0.7 0.647757
Target:  5'- gGCGAGcccccGCCGGGCaGAC-AGGAGCGc -3'
miRNA:   3'- -CGCUCa----CGGCUCGcCUGcUCCUUGCu -5'
6379 5' -56.9 NC_001847.1 + 15324 0.71 0.637639
Target:  5'- cGCGGGcGUagcggGGGCGGGCGGGGggUGc -3'
miRNA:   3'- -CGCUCaCGg----CUCGCCUGCUCCuuGCu -5'
6379 5' -56.9 NC_001847.1 + 14568 0.71 0.636627
Target:  5'- cGCGGGUGCUG-GCGGGCGcgcggcucucuaAGGAcgccgucuggcgcGCGGu -3'
miRNA:   3'- -CGCUCACGGCuCGCCUGC------------UCCU-------------UGCU- -5'
6379 5' -56.9 NC_001847.1 + 26450 0.71 0.627517
Target:  5'- aGCGGuagGCCGcGCGGcuguucgccagcGCGGGGAGCGGa -3'
miRNA:   3'- -CGCUca-CGGCuCGCC------------UGCUCCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 104960 0.71 0.627517
Target:  5'- gGCGAGcGCCGGGCGccagggcuCGGGGAagaGCGGg -3'
miRNA:   3'- -CGCUCaCGGCUCGCcu------GCUCCU---UGCU- -5'
6379 5' -56.9 NC_001847.1 + 2147 0.71 0.627517
Target:  5'- gGCGAGcGCCGGGCGccagggcuCGGGGAagaGCGGg -3'
miRNA:   3'- -CGCUCaCGGCUCGCcu------GCUCCU---UGCU- -5'
6379 5' -56.9 NC_001847.1 + 134734 0.71 0.627517
Target:  5'- aGCGAGggagGagGAGCgagGGAgGAGGAGCGAg -3'
miRNA:   3'- -CGCUCa---CggCUCG---CCUgCUCCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 109260 0.71 0.627517
Target:  5'- aGCGGGUcgGCagGGGCGGGCugcaagcgaGGGGGGCGAg -3'
miRNA:   3'- -CGCUCA--CGg-CUCGCCUG---------CUCCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 134818 0.71 0.627517
Target:  5'- aGCGAGggagGagGAGCgagGGAgGAGGAGCGAg -3'
miRNA:   3'- -CGCUCa---CggCUCG---CCUgCUCCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 134860 0.71 0.627517
Target:  5'- aGCGAGggagGagGAGCgagGGAgGAGGAGCGAg -3'
miRNA:   3'- -CGCUCa---CggCUCG---CCUgCUCCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 134776 0.71 0.627517
Target:  5'- aGCGAGggagGagGAGCgagGGAgGAGGAGCGAg -3'
miRNA:   3'- -CGCUCa---CggCUCG---CCUgCUCCUUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.