miRNA display CGI


Results 81 - 100 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6379 5' -56.9 NC_001847.1 + 54647 0.72 0.557158
Target:  5'- cGCGAGcggcagcGCCGcgcuGCGGaACGGGGAGCGc -3'
miRNA:   3'- -CGCUCa------CGGCu---CGCC-UGCUCCUUGCu -5'
6379 5' -56.9 NC_001847.1 + 55072 0.69 0.746892
Target:  5'- cGCGuuuaUGCUG-GCGGccGCGGGGGGCGGg -3'
miRNA:   3'- -CGCuc--ACGGCuCGCC--UGCUCCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 55368 0.68 0.765821
Target:  5'- cGCGGGcGCCgGAGaCGGucgGCGAGGAcaGCGu -3'
miRNA:   3'- -CGCUCaCGG-CUC-GCC---UGCUCCU--UGCu -5'
6379 5' -56.9 NC_001847.1 + 56684 0.67 0.836203
Target:  5'- cGCGAGU-CCGuGCGcACGAGGuGCa- -3'
miRNA:   3'- -CGCUCAcGGCuCGCcUGCUCCuUGcu -5'
6379 5' -56.9 NC_001847.1 + 57145 0.69 0.737275
Target:  5'- cGUGAcguacUGCCacGAGCuGGGCGAGGGGCGc -3'
miRNA:   3'- -CGCUc----ACGG--CUCG-CCUGCUCCUUGCu -5'
6379 5' -56.9 NC_001847.1 + 58387 0.69 0.727569
Target:  5'- aGCGGGUGCCG-GCGGGC-AGcAGCu- -3'
miRNA:   3'- -CGCUCACGGCuCGCCUGcUCcUUGcu -5'
6379 5' -56.9 NC_001847.1 + 59034 0.68 0.802214
Target:  5'- gGCGGGUGCgGcGGCGGAgGAGaGugGu -3'
miRNA:   3'- -CGCUCACGgC-UCGCCUgCUCcUugCu -5'
6379 5' -56.9 NC_001847.1 + 59871 0.66 0.867294
Target:  5'- cCGAGgGCCGGcgcGCGGccuccgcguugGCGAGGAggGCGGc -3'
miRNA:   3'- cGCUCaCGGCU---CGCC-----------UGCUCCU--UGCU- -5'
6379 5' -56.9 NC_001847.1 + 61318 0.66 0.867294
Target:  5'- cGCGGGUGCgCgGGGCGgGGCG-GGcGCGc -3'
miRNA:   3'- -CGCUCACG-G-CUCGC-CUGCuCCuUGCu -5'
6379 5' -56.9 NC_001847.1 + 61443 0.66 0.867294
Target:  5'- cGCGcc-GCCGGGCGcGGCGAGG--CGGu -3'
miRNA:   3'- -CGCucaCGGCUCGC-CUGCUCCuuGCU- -5'
6379 5' -56.9 NC_001847.1 + 62483 0.66 0.859817
Target:  5'- -gGGGUcGCCG-GCGGGCGGccgcGGggUGGc -3'
miRNA:   3'- cgCUCA-CGGCuCGCCUGCU----CCuuGCU- -5'
6379 5' -56.9 NC_001847.1 + 62912 0.69 0.717782
Target:  5'- cGCGGGUGCucggggcccgCGGGCGGcuccucguCGGGGGGCa- -3'
miRNA:   3'- -CGCUCACG----------GCUCGCCu-------GCUCCUUGcu -5'
6379 5' -56.9 NC_001847.1 + 63993 0.67 0.835387
Target:  5'- gGCGcucaAGUGCCgcGAGCucuacccGGGCGGcGGGACGGg -3'
miRNA:   3'- -CGC----UCACGG--CUCG-------CCUGCU-CCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 64166 0.66 0.888465
Target:  5'- uGC-AG-GCCGcuugcGCGGACGGGGcGGCGGg -3'
miRNA:   3'- -CGcUCaCGGCu----CGCCUGCUCC-UUGCU- -5'
6379 5' -56.9 NC_001847.1 + 67209 0.69 0.727569
Target:  5'- ---cGUGCCGAGCGG-CGGGcGcGCGGu -3'
miRNA:   3'- cgcuCACGGCUCGCCuGCUC-CuUGCU- -5'
6379 5' -56.9 NC_001847.1 + 68796 0.67 0.810957
Target:  5'- gGCGGccGCgCGAGCGGGCcgacggGGGGAACa- -3'
miRNA:   3'- -CGCUcaCG-GCUCGCCUG------CUCCUUGcu -5'
6379 5' -56.9 NC_001847.1 + 68951 0.66 0.852138
Target:  5'- gGCG-GcGCCGAuGCGGAagaGGGGGCGGc -3'
miRNA:   3'- -CGCuCaCGGCU-CGCCUgc-UCCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 69198 0.67 0.827959
Target:  5'- cGCGAGcuccagcGCCuGGGCGuccGCGGGGAACGc -3'
miRNA:   3'- -CGCUCa------CGG-CUCGCc--UGCUCCUUGCu -5'
6379 5' -56.9 NC_001847.1 + 69418 0.67 0.827959
Target:  5'- uCGAGcGCCGccccGGCGGGCucuGGGAUGAa -3'
miRNA:   3'- cGCUCaCGGC----UCGCCUGcu-CCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 70803 0.66 0.858297
Target:  5'- gGCGGGgccgggaggggauccGCCGAGCGccgaguccccguaaGGCGAucGGGGCGAa -3'
miRNA:   3'- -CGCUCa--------------CGGCUCGC--------------CUGCU--CCUUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.