Results 101 - 120 of 194 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6379 | 5' | -56.9 | NC_001847.1 | + | 72994 | 0.68 | 0.775115 |
Target: 5'- cGCGGGagcugGCCGcagcGCGGGCGcGGAACc- -3' miRNA: 3'- -CGCUCa----CGGCu---CGCCUGCuCCUUGcu -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 73157 | 0.73 | 0.498713 |
Target: 5'- gGCGGcGcGCCGGGCGGAgGAGGcgGACGc -3' miRNA: 3'- -CGCU-CaCGGCUCGCCUgCUCC--UUGCu -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 73205 | 0.66 | 0.867294 |
Target: 5'- cGCGGGccgcgccgccGCUGAcGCGGAgGAGGGggGCGGc -3' miRNA: 3'- -CGCUCa---------CGGCU-CGCCUgCUCCU--UGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 73744 | 0.66 | 0.864328 |
Target: 5'- cGCGAGggcaguuccaagcGCCGGGCGGcgGCGcGGGccgcuACGAg -3' miRNA: 3'- -CGCUCa------------CGGCUCGCC--UGCuCCU-----UGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 74027 | 0.72 | 0.567108 |
Target: 5'- gGCGcGUGCCGcuGGCGGACGuGGcGCu- -3' miRNA: 3'- -CGCuCACGGC--UCGCCUGCuCCuUGcu -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 74992 | 0.68 | 0.75641 |
Target: 5'- gGCGccaggcucAGUccGCCG-GCGGGCGGGGGGCc- -3' miRNA: 3'- -CGC--------UCA--CGGCuCGCCUGCUCCUUGcu -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 75484 | 0.68 | 0.802214 |
Target: 5'- -aGAGcGCaCGGGCGGGCGc-GAGCGGg -3' miRNA: 3'- cgCUCaCG-GCUCGCCUGCucCUUGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 76737 | 0.7 | 0.678006 |
Target: 5'- gGCGGGgaaggacgGUCGGGCgcucGGGCGGGGGGCa- -3' miRNA: 3'- -CGCUCa-------CGGCUCG----CCUGCUCCUUGcu -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 77222 | 0.66 | 0.852138 |
Target: 5'- cGCGGGccGCCGGGCccGGACuuGGcGCGGu -3' miRNA: 3'- -CGCUCa-CGGCUCG--CCUGcuCCuUGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 77255 | 0.66 | 0.881623 |
Target: 5'- cGCGGGcGCUG-GCGGGCGAcacccucguGGcGACGGc -3' miRNA: 3'- -CGCUCaCGGCuCGCCUGCU---------CC-UUGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 78692 | 0.66 | 0.867294 |
Target: 5'- gGCGcuGGUGCCGGGCaGcacGCGAGugcGGGCGGu -3' miRNA: 3'- -CGC--UCACGGCUCGcC---UGCUC---CUUGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 79566 | 0.68 | 0.783374 |
Target: 5'- cGCGGGgggcGCCGGGCucgcggccucuucGGGCG-GGGGCGc -3' miRNA: 3'- -CGCUCa---CGGCUCG-------------CCUGCuCCUUGCu -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 81030 | 0.66 | 0.859817 |
Target: 5'- gGCGAc-GCCGccGCGGACugcGGGGGCGAc -3' miRNA: 3'- -CGCUcaCGGCu-CGCCUGc--UCCUUGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 81069 | 0.75 | 0.374871 |
Target: 5'- gGCGGG-GCCuGGCuGGACGGGGAcgACGAa -3' miRNA: 3'- -CGCUCaCGGcUCG-CCUGCUCCU--UGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 81244 | 0.7 | 0.667949 |
Target: 5'- gGCGGG-GCCGucGCgaGGACGGGGGGCc- -3' miRNA: 3'- -CGCUCaCGGCu-CG--CCUGCUCCUUGcu -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 81577 | 0.7 | 0.667949 |
Target: 5'- cGCGGG-GCCG-GCGGcuACG-GGAGCGu -3' miRNA: 3'- -CGCUCaCGGCuCGCC--UGCuCCUUGCu -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 82473 | 0.66 | 0.852138 |
Target: 5'- uGCGGcGUGCCGuG-GGACGAGcccGCGGc -3' miRNA: 3'- -CGCU-CACGGCuCgCCUGCUCcu-UGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 82796 | 0.68 | 0.775115 |
Target: 5'- aCGAGUuucugGCCGAggcgGCGGGCGaAGGcGACGGc -3' miRNA: 3'- cGCUCA-----CGGCU----CGCCUGC-UCC-UUGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 83038 | 0.66 | 0.888465 |
Target: 5'- cGCGGGccgcguggccaUGaCCGAGCGcACGAGGuugcuggcGGCGAa -3' miRNA: 3'- -CGCUC-----------AC-GGCUCGCcUGCUCC--------UUGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 83250 | 0.66 | 0.881623 |
Target: 5'- gGCGGcgGCCGAaaGCGcGGCG-GGGGCGGg -3' miRNA: 3'- -CGCUcaCGGCU--CGC-CUGCuCCUUGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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