miRNA display CGI


Results 121 - 140 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6379 5' -56.9 NC_001847.1 + 84234 0.68 0.775115
Target:  5'- cCGGG-GCCGccGCGGGgGAGGAggGCGGc -3'
miRNA:   3'- cGCUCaCGGCu-CGCCUgCUCCU--UGCU- -5'
6379 5' -56.9 NC_001847.1 + 84362 0.66 0.888465
Target:  5'- cGCGAgGUGUauUGAGCGGcCGcGGAccGCGGc -3'
miRNA:   3'- -CGCU-CACG--GCUCGCCuGCuCCU--UGCU- -5'
6379 5' -56.9 NC_001847.1 + 84450 0.69 0.746892
Target:  5'- uUGAcGUGCgCGGGgGGugG-GGAGCGGg -3'
miRNA:   3'- cGCU-CACG-GCUCgCCugCuCCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 86213 0.67 0.844265
Target:  5'- uGCuGGUGCaaguggaGAGCcugcaccgcguGGACGAGGAGCu- -3'
miRNA:   3'- -CGcUCACGg------CUCG-----------CCUGCUCCUUGcu -5'
6379 5' -56.9 NC_001847.1 + 88256 0.75 0.408124
Target:  5'- cGCGGGgcGCCGGGCGGGgacggGGGGAGCGc -3'
miRNA:   3'- -CGCUCa-CGGCUCGCCUg----CUCCUUGCu -5'
6379 5' -56.9 NC_001847.1 + 88315 0.7 0.667949
Target:  5'- gGCGAGgagGaaGAGgaGGACGAGGGGgGAg -3'
miRNA:   3'- -CGCUCa--CggCUCg-CCUGCUCCUUgCU- -5'
6379 5' -56.9 NC_001847.1 + 88549 0.67 0.810957
Target:  5'- cGCGAG-GCCGcGCcGGCGGGGcuGACGc -3'
miRNA:   3'- -CGCUCaCGGCuCGcCUGCUCC--UUGCu -5'
6379 5' -56.9 NC_001847.1 + 90803 0.7 0.678006
Target:  5'- aGCGAGaGCgaGAGCGGAgCGAgagcaaaggcGGGGCGAg -3'
miRNA:   3'- -CGCUCaCGg-CUCGCCU-GCU----------CCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 92088 0.71 0.60729
Target:  5'- cGCGu-UGCCGAuUGGAUGAGGAAgGAg -3'
miRNA:   3'- -CGCucACGGCUcGCCUGCUCCUUgCU- -5'
6379 5' -56.9 NC_001847.1 + 92983 0.68 0.784285
Target:  5'- gGCGGcGUGCagccacacgCGAGCGcuggaGGCGAGGAAgGAg -3'
miRNA:   3'- -CGCU-CACG---------GCUCGC-----CUGCUCCUUgCU- -5'
6379 5' -56.9 NC_001847.1 + 94502 0.67 0.819542
Target:  5'- cGCGAG-GCgCG-GCGGACGuGGGG-GAa -3'
miRNA:   3'- -CGCUCaCG-GCuCGCCUGCuCCUUgCU- -5'
6379 5' -56.9 NC_001847.1 + 95153 0.7 0.657863
Target:  5'- uGgGGGUGCCG-GCauGGCGGGGGGCGc -3'
miRNA:   3'- -CgCUCACGGCuCGc-CUGCUCCUUGCu -5'
6379 5' -56.9 NC_001847.1 + 95651 0.68 0.793321
Target:  5'- cGCGGGggGCgGcGCGGgccgcucuggcGCGGGGGGCGGc -3'
miRNA:   3'- -CGCUCa-CGgCuCGCC-----------UGCUCCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 95705 0.68 0.793321
Target:  5'- cGCGGGggGCgGcGCGGgccgcucuggcGCGGGGGGCGGc -3'
miRNA:   3'- -CGCUCa-CGgCuCGCC-----------UGCUCCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 95759 0.68 0.793321
Target:  5'- cGCGGGggGCgGcGCGGgccgcucuggcGCGGGGGGCGGc -3'
miRNA:   3'- -CGCUCa-CGgCuCGCC-----------UGCUCCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 96338 0.68 0.784285
Target:  5'- gGCGGG-GCCGgcGGCGGcaaugGCGGGGccGGCGGu -3'
miRNA:   3'- -CGCUCaCGGC--UCGCC-----UGCUCC--UUGCU- -5'
6379 5' -56.9 NC_001847.1 + 96380 0.68 0.793321
Target:  5'- gGCGGG-GCCGgcGGCGGcaaugGCGGGGccGGCGGc -3'
miRNA:   3'- -CGCUCaCGGC--UCGCC-----UGCUCC--UUGCU- -5'
6379 5' -56.9 NC_001847.1 + 96631 0.68 0.764885
Target:  5'- cGCGGGgGCCG-GCGGguacgcgucgugcGCGGGGGccgGCGGg -3'
miRNA:   3'- -CGCUCaCGGCuCGCC-------------UGCUCCU---UGCU- -5'
6379 5' -56.9 NC_001847.1 + 96940 0.66 0.874565
Target:  5'- aGCGGGUcGCCGcuAGCGG-CGGcaaaguccGGGACGu -3'
miRNA:   3'- -CGCUCA-CGGC--UCGCCuGCU--------CCUUGCu -5'
6379 5' -56.9 NC_001847.1 + 97310 0.66 0.852138
Target:  5'- gGCGcGUGCCuc-CGucCGAGGAGCGAg -3'
miRNA:   3'- -CGCuCACGGcucGCcuGCUCCUUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.