miRNA display CGI


Results 141 - 160 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6379 5' -56.9 NC_001847.1 + 97830 0.68 0.802214
Target:  5'- gGCGcGUGCCGccacacggcuAGCacgucGGACGGGGAaagGCGGc -3'
miRNA:   3'- -CGCuCACGGC----------UCG-----CCUGCUCCU---UGCU- -5'
6379 5' -56.9 NC_001847.1 + 99345 0.67 0.836203
Target:  5'- gGUGGGcgGCCGGGCGGAUcuuGGccccuGCGAc -3'
miRNA:   3'- -CGCUCa-CGGCUCGCCUGcu-CCu----UGCU- -5'
6379 5' -56.9 NC_001847.1 + 99767 0.68 0.765821
Target:  5'- aGUGAGccGCCGcGGCuuuGGGCGGGGGGCa- -3'
miRNA:   3'- -CGCUCa-CGGC-UCG---CCUGCUCCUUGcu -5'
6379 5' -56.9 NC_001847.1 + 99808 0.66 0.881623
Target:  5'- uGCGGG-GUCgGAGCGGcCGGGGGcCGc -3'
miRNA:   3'- -CGCUCaCGG-CUCGCCuGCUCCUuGCu -5'
6379 5' -56.9 NC_001847.1 + 100528 0.73 0.498713
Target:  5'- uGCGGGUcGCggagUGGGUGGGCGGGGAGCc- -3'
miRNA:   3'- -CGCUCA-CG----GCUCGCCUGCUCCUUGcu -5'
6379 5' -56.9 NC_001847.1 + 101082 0.73 0.517921
Target:  5'- cGCGGGgGCCGGGUcGGCGGGGcgGGCGGg -3'
miRNA:   3'- -CGCUCaCGGCUCGcCUGCUCC--UUGCU- -5'
6379 5' -56.9 NC_001847.1 + 102692 0.68 0.784285
Target:  5'- gGCGGGggcagggcGCCGGGCGGGCGGcGAAa-- -3'
miRNA:   3'- -CGCUCa-------CGGCUCGCCUGCUcCUUgcu -5'
6379 5' -56.9 NC_001847.1 + 103228 0.7 0.667949
Target:  5'- cCGAGgGCCcgGGGCGGGCGGGcGGCGGc -3'
miRNA:   3'- cGCUCaCGG--CUCGCCUGCUCcUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 103624 0.72 0.567108
Target:  5'- gGCGGGggaCGAcgccGCGGACGAGGA-CGAg -3'
miRNA:   3'- -CGCUCacgGCU----CGCCUGCUCCUuGCU- -5'
6379 5' -56.9 NC_001847.1 + 104960 0.71 0.627517
Target:  5'- gGCGAGcGCCGGGCGccagggcuCGGGGAagaGCGGg -3'
miRNA:   3'- -CGCUCaCGGCUCGCcu------GCUCCU---UGCU- -5'
6379 5' -56.9 NC_001847.1 + 105110 0.68 0.75641
Target:  5'- gGCGGGgccGCCGGGCGGcAUGGGccccagcacgcGGGCGGg -3'
miRNA:   3'- -CGCUCa--CGGCUCGCC-UGCUC-----------CUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 107514 1.11 0.00186
Target:  5'- cGCGAGUGCCGAGCGGACGAGGAACGAu -3'
miRNA:   3'- -CGCUCACGGCUCGCCUGCUCCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 108293 0.66 0.880927
Target:  5'- uCGGGUGCCuGGGCGGAcugcucuCGuGGAccACGc -3'
miRNA:   3'- cGCUCACGG-CUCGCCU-------GCuCCU--UGCu -5'
6379 5' -56.9 NC_001847.1 + 109260 0.71 0.627517
Target:  5'- aGCGGGUcgGCagGGGCGGGCugcaagcgaGGGGGGCGAg -3'
miRNA:   3'- -CGCUCA--CGg-CUCGCCUG---------CUCCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 111664 0.66 0.852138
Target:  5'- aGCGAcgcGcGCCGAGCGcGAuggcCGAGGcGGCGGa -3'
miRNA:   3'- -CGCU---CaCGGCUCGC-CU----GCUCC-UUGCU- -5'
6379 5' -56.9 NC_001847.1 + 111795 0.68 0.784285
Target:  5'- cCGGG-GgCGGGCaGACGGGGGugGGg -3'
miRNA:   3'- cGCUCaCgGCUCGcCUGCUCCUugCU- -5'
6379 5' -56.9 NC_001847.1 + 113127 0.68 0.75641
Target:  5'- aCGAGgagGaCGAggagGCGGACGAGGAGgGGg -3'
miRNA:   3'- cGCUCa--CgGCU----CGCCUGCUCCUUgCU- -5'
6379 5' -56.9 NC_001847.1 + 115668 0.69 0.746892
Target:  5'- cGCGuccGUGCgggUGAGCGGcuGCGcGGGGGCGAg -3'
miRNA:   3'- -CGCu--CACG---GCUCGCC--UGC-UCCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 116073 0.69 0.737275
Target:  5'- aGCGGG-GCCGAcGaCGG-CGAcuGGGACGAc -3'
miRNA:   3'- -CGCUCaCGGCU-C-GCCuGCU--CCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 117308 0.67 0.81009
Target:  5'- cGCGA--GCCGcgaugggcgaccuAGCGG-CGGGGGGCGGc -3'
miRNA:   3'- -CGCUcaCGGC-------------UCGCCuGCUCCUUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.