miRNA display CGI


Results 41 - 60 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6379 5' -56.9 NC_001847.1 + 109260 0.71 0.627517
Target:  5'- aGCGGGUcgGCagGGGCGGGCugcaagcgaGGGGGGCGAg -3'
miRNA:   3'- -CGCUCA--CGg-CUCGCCUG---------CUCCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 108293 0.66 0.880927
Target:  5'- uCGGGUGCCuGGGCGGAcugcucuCGuGGAccACGc -3'
miRNA:   3'- cGCUCACGG-CUCGCCU-------GCuCCU--UGCu -5'
6379 5' -56.9 NC_001847.1 + 107514 1.11 0.00186
Target:  5'- cGCGAGUGCCGAGCGGACGAGGAACGAu -3'
miRNA:   3'- -CGCUCACGGCUCGCCUGCUCCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 105110 0.68 0.75641
Target:  5'- gGCGGGgccGCCGGGCGGcAUGGGccccagcacgcGGGCGGg -3'
miRNA:   3'- -CGCUCa--CGGCUCGCC-UGCUC-----------CUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 104960 0.71 0.627517
Target:  5'- gGCGAGcGCCGGGCGccagggcuCGGGGAagaGCGGg -3'
miRNA:   3'- -CGCUCaCGGCUCGCcu------GCUCCU---UGCU- -5'
6379 5' -56.9 NC_001847.1 + 103624 0.72 0.567108
Target:  5'- gGCGGGggaCGAcgccGCGGACGAGGA-CGAg -3'
miRNA:   3'- -CGCUCacgGCU----CGCCUGCUCCUuGCU- -5'
6379 5' -56.9 NC_001847.1 + 103228 0.7 0.667949
Target:  5'- cCGAGgGCCcgGGGCGGGCGGGcGGCGGc -3'
miRNA:   3'- cGCUCaCGG--CUCGCCUGCUCcUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 102692 0.68 0.784285
Target:  5'- gGCGGGggcagggcGCCGGGCGGGCGGcGAAa-- -3'
miRNA:   3'- -CGCUCa-------CGGCUCGCCUGCUcCUUgcu -5'
6379 5' -56.9 NC_001847.1 + 101082 0.73 0.517921
Target:  5'- cGCGGGgGCCGGGUcGGCGGGGcgGGCGGg -3'
miRNA:   3'- -CGCUCaCGGCUCGcCUGCUCC--UUGCU- -5'
6379 5' -56.9 NC_001847.1 + 100528 0.73 0.498713
Target:  5'- uGCGGGUcGCggagUGGGUGGGCGGGGAGCc- -3'
miRNA:   3'- -CGCUCA-CG----GCUCGCCUGCUCCUUGcu -5'
6379 5' -56.9 NC_001847.1 + 99808 0.66 0.881623
Target:  5'- uGCGGG-GUCgGAGCGGcCGGGGGcCGc -3'
miRNA:   3'- -CGCUCaCGG-CUCGCCuGCUCCUuGCu -5'
6379 5' -56.9 NC_001847.1 + 99767 0.68 0.765821
Target:  5'- aGUGAGccGCCGcGGCuuuGGGCGGGGGGCa- -3'
miRNA:   3'- -CGCUCa-CGGC-UCG---CCUGCUCCUUGcu -5'
6379 5' -56.9 NC_001847.1 + 99345 0.67 0.836203
Target:  5'- gGUGGGcgGCCGGGCGGAUcuuGGccccuGCGAc -3'
miRNA:   3'- -CGCUCa-CGGCUCGCCUGcu-CCu----UGCU- -5'
6379 5' -56.9 NC_001847.1 + 97830 0.68 0.802214
Target:  5'- gGCGcGUGCCGccacacggcuAGCacgucGGACGGGGAaagGCGGc -3'
miRNA:   3'- -CGCuCACGGC----------UCG-----CCUGCUCCU---UGCU- -5'
6379 5' -56.9 NC_001847.1 + 97310 0.66 0.852138
Target:  5'- gGCGcGUGCCuc-CGucCGAGGAGCGAg -3'
miRNA:   3'- -CGCuCACGGcucGCcuGCUCCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 96940 0.66 0.874565
Target:  5'- aGCGGGUcGCCGcuAGCGG-CGGcaaaguccGGGACGu -3'
miRNA:   3'- -CGCUCA-CGGC--UCGCCuGCU--------CCUUGCu -5'
6379 5' -56.9 NC_001847.1 + 96631 0.68 0.764885
Target:  5'- cGCGGGgGCCG-GCGGguacgcgucgugcGCGGGGGccgGCGGg -3'
miRNA:   3'- -CGCUCaCGGCuCGCC-------------UGCUCCU---UGCU- -5'
6379 5' -56.9 NC_001847.1 + 96380 0.68 0.793321
Target:  5'- gGCGGG-GCCGgcGGCGGcaaugGCGGGGccGGCGGc -3'
miRNA:   3'- -CGCUCaCGGC--UCGCC-----UGCUCC--UUGCU- -5'
6379 5' -56.9 NC_001847.1 + 96338 0.68 0.784285
Target:  5'- gGCGGG-GCCGgcGGCGGcaaugGCGGGGccGGCGGu -3'
miRNA:   3'- -CGCUCaCGGC--UCGCC-----UGCUCC--UUGCU- -5'
6379 5' -56.9 NC_001847.1 + 95759 0.68 0.793321
Target:  5'- cGCGGGggGCgGcGCGGgccgcucuggcGCGGGGGGCGGc -3'
miRNA:   3'- -CGCUCa-CGgCuCGCC-----------UGCUCCUUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.