miRNA display CGI


Results 81 - 100 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6379 5' -56.9 NC_001847.1 + 81069 0.75 0.374871
Target:  5'- gGCGGG-GCCuGGCuGGACGGGGAcgACGAa -3'
miRNA:   3'- -CGCUCaCGGcUCG-CCUGCUCCU--UGCU- -5'
6379 5' -56.9 NC_001847.1 + 81030 0.66 0.859817
Target:  5'- gGCGAc-GCCGccGCGGACugcGGGGGCGAc -3'
miRNA:   3'- -CGCUcaCGGCu-CGCCUGc--UCCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 79566 0.68 0.783374
Target:  5'- cGCGGGgggcGCCGGGCucgcggccucuucGGGCG-GGGGCGc -3'
miRNA:   3'- -CGCUCa---CGGCUCG-------------CCUGCuCCUUGCu -5'
6379 5' -56.9 NC_001847.1 + 78692 0.66 0.867294
Target:  5'- gGCGcuGGUGCCGGGCaGcacGCGAGugcGGGCGGu -3'
miRNA:   3'- -CGC--UCACGGCUCGcC---UGCUC---CUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 77255 0.66 0.881623
Target:  5'- cGCGGGcGCUG-GCGGGCGAcacccucguGGcGACGGc -3'
miRNA:   3'- -CGCUCaCGGCuCGCCUGCU---------CC-UUGCU- -5'
6379 5' -56.9 NC_001847.1 + 77222 0.66 0.852138
Target:  5'- cGCGGGccGCCGGGCccGGACuuGGcGCGGu -3'
miRNA:   3'- -CGCUCa-CGGCUCG--CCUGcuCCuUGCU- -5'
6379 5' -56.9 NC_001847.1 + 76737 0.7 0.678006
Target:  5'- gGCGGGgaaggacgGUCGGGCgcucGGGCGGGGGGCa- -3'
miRNA:   3'- -CGCUCa-------CGGCUCG----CCUGCUCCUUGcu -5'
6379 5' -56.9 NC_001847.1 + 75484 0.68 0.802214
Target:  5'- -aGAGcGCaCGGGCGGGCGc-GAGCGGg -3'
miRNA:   3'- cgCUCaCG-GCUCGCCUGCucCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 74992 0.68 0.75641
Target:  5'- gGCGccaggcucAGUccGCCG-GCGGGCGGGGGGCc- -3'
miRNA:   3'- -CGC--------UCA--CGGCuCGCCUGCUCCUUGcu -5'
6379 5' -56.9 NC_001847.1 + 74027 0.72 0.567108
Target:  5'- gGCGcGUGCCGcuGGCGGACGuGGcGCu- -3'
miRNA:   3'- -CGCuCACGGC--UCGCCUGCuCCuUGcu -5'
6379 5' -56.9 NC_001847.1 + 73744 0.66 0.864328
Target:  5'- cGCGAGggcaguuccaagcGCCGGGCGGcgGCGcGGGccgcuACGAg -3'
miRNA:   3'- -CGCUCa------------CGGCUCGCC--UGCuCCU-----UGCU- -5'
6379 5' -56.9 NC_001847.1 + 73205 0.66 0.867294
Target:  5'- cGCGGGccgcgccgccGCUGAcGCGGAgGAGGGggGCGGc -3'
miRNA:   3'- -CGCUCa---------CGGCU-CGCCUgCUCCU--UGCU- -5'
6379 5' -56.9 NC_001847.1 + 73157 0.73 0.498713
Target:  5'- gGCGGcGcGCCGGGCGGAgGAGGcgGACGc -3'
miRNA:   3'- -CGCU-CaCGGCUCGCCUgCUCC--UUGCu -5'
6379 5' -56.9 NC_001847.1 + 72994 0.68 0.775115
Target:  5'- cGCGGGagcugGCCGcagcGCGGGCGcGGAACc- -3'
miRNA:   3'- -CGCUCa----CGGCu---CGCCUGCuCCUUGcu -5'
6379 5' -56.9 NC_001847.1 + 70803 0.66 0.858297
Target:  5'- gGCGGGgccgggaggggauccGCCGAGCGccgaguccccguaaGGCGAucGGGGCGAa -3'
miRNA:   3'- -CGCUCa--------------CGGCUCGC--------------CUGCU--CCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 69418 0.67 0.827959
Target:  5'- uCGAGcGCCGccccGGCGGGCucuGGGAUGAa -3'
miRNA:   3'- cGCUCaCGGC----UCGCCUGcu-CCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 69198 0.67 0.827959
Target:  5'- cGCGAGcuccagcGCCuGGGCGuccGCGGGGAACGc -3'
miRNA:   3'- -CGCUCa------CGG-CUCGCc--UGCUCCUUGCu -5'
6379 5' -56.9 NC_001847.1 + 68951 0.66 0.852138
Target:  5'- gGCG-GcGCCGAuGCGGAagaGGGGGCGGc -3'
miRNA:   3'- -CGCuCaCGGCU-CGCCUgc-UCCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 68796 0.67 0.810957
Target:  5'- gGCGGccGCgCGAGCGGGCcgacggGGGGAACa- -3'
miRNA:   3'- -CGCUcaCG-GCUCGCCUG------CUCCUUGcu -5'
6379 5' -56.9 NC_001847.1 + 67209 0.69 0.727569
Target:  5'- ---cGUGCCGAGCGG-CGGGcGcGCGGu -3'
miRNA:   3'- cgcuCACGGCUCGCCuGCUC-CuUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.