miRNA display CGI


Results 121 - 140 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6379 5' -56.9 NC_001847.1 + 48841 0.72 0.567108
Target:  5'- cGCGGGggcgccucgGCCGcGCGGcGCGAGGuACGGg -3'
miRNA:   3'- -CGCUCa--------CGGCuCGCC-UGCUCCuUGCU- -5'
6379 5' -56.9 NC_001847.1 + 48184 0.67 0.810957
Target:  5'- gGCGuccugcuGUGCCGcgccGGCGGccagggcCGAGGAGCGc -3'
miRNA:   3'- -CGCu------CACGGC----UCGCCu------GCUCCUUGCu -5'
6379 5' -56.9 NC_001847.1 + 46892 0.66 0.867294
Target:  5'- uGCGAGcGCCGcuucAGCGaGGCuucGGGGGGCGc -3'
miRNA:   3'- -CGCUCaCGGC----UCGC-CUG---CUCCUUGCu -5'
6379 5' -56.9 NC_001847.1 + 46341 0.69 0.717782
Target:  5'- cGCGGG-GCCGcgucGGCGGcauCGGGGGGCu- -3'
miRNA:   3'- -CGCUCaCGGC----UCGCCu--GCUCCUUGcu -5'
6379 5' -56.9 NC_001847.1 + 45142 0.69 0.707924
Target:  5'- cCGAgGUGCCG-GCGGugagcGCGGGGGACc- -3'
miRNA:   3'- cGCU-CACGGCuCGCC-----UGCUCCUUGcu -5'
6379 5' -56.9 NC_001847.1 + 42729 0.79 0.231724
Target:  5'- gGCGGGcgGCCGcGCGGGCGGcGGGGCGGa -3'
miRNA:   3'- -CGCUCa-CGGCuCGCCUGCU-CCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 42173 0.73 0.488286
Target:  5'- gGCGGGUGCUG-GCGGaauGCGAGGccuucgcAGCGGa -3'
miRNA:   3'- -CGCUCACGGCuCGCC---UGCUCC-------UUGCU- -5'
6379 5' -56.9 NC_001847.1 + 41976 0.66 0.865815
Target:  5'- gGCGgcAGUcugucucGCCGAGCGcugcgucGGCGcGGAACGAa -3'
miRNA:   3'- -CGC--UCA-------CGGCUCGC-------CUGCuCCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 41440 0.66 0.888465
Target:  5'- uGCGAGUcGCCgGGGCccAUGAaccGGAACGAg -3'
miRNA:   3'- -CGCUCA-CGG-CUCGccUGCU---CCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 37208 0.66 0.881623
Target:  5'- gGCGcccGGUGCCGcuuGGCGG-CGGcGcGGACGAc -3'
miRNA:   3'- -CGC---UCACGGC---UCGCCuGCU-C-CUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 37029 0.69 0.744017
Target:  5'- aGCGGGgcGCCGGGCucgcacucuagccuGGGCuGGGGGCGGc -3'
miRNA:   3'- -CGCUCa-CGGCUCG--------------CCUGcUCCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 36988 0.67 0.819542
Target:  5'- aGCGGGcccgcGCCGAGCGG-CGGcGGcGCGc -3'
miRNA:   3'- -CGCUCa----CGGCUCGCCuGCU-CCuUGCu -5'
6379 5' -56.9 NC_001847.1 + 34646 0.75 0.383011
Target:  5'- cCGAG-GCCGAGCGGcGCGccgaGGGGGCGGc -3'
miRNA:   3'- cGCUCaCGGCUCGCC-UGC----UCCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 34507 0.73 0.489229
Target:  5'- aGCGAG-GCCGAcGCGGACGGcGccGGCGAu -3'
miRNA:   3'- -CGCUCaCGGCU-CGCCUGCUcC--UUGCU- -5'
6379 5' -56.9 NC_001847.1 + 34461 0.69 0.698002
Target:  5'- cGCG-GUgGCCGccGGCGG-CGAGGAuGCGGa -3'
miRNA:   3'- -CGCuCA-CGGC--UCGCCuGCUCCU-UGCU- -5'
6379 5' -56.9 NC_001847.1 + 34165 0.7 0.657863
Target:  5'- cGCGAGgcgGCUGAggcgcuGCGGGCcGGGGGCGc -3'
miRNA:   3'- -CGCUCa--CGGCU------CGCCUGcUCCUUGCu -5'
6379 5' -56.9 NC_001847.1 + 33864 0.7 0.667949
Target:  5'- cGCGGGcUGggGGGCGGGCagugagGAGGGACGAg -3'
miRNA:   3'- -CGCUC-ACggCUCGCCUG------CUCCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 33716 0.67 0.827959
Target:  5'- cGCGuG-GCCGAGCug--GGGGAGCGAc -3'
miRNA:   3'- -CGCuCaCGGCUCGccugCUCCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 33137 0.67 0.810957
Target:  5'- gGCGGGUgGUgGAGUGGGuCGAGG-GCGc -3'
miRNA:   3'- -CGCUCA-CGgCUCGCCU-GCUCCuUGCu -5'
6379 5' -56.9 NC_001847.1 + 32991 0.73 0.47983
Target:  5'- gGCGGGcagggcgGCCgGAGCGGcCGGGGGGCGc -3'
miRNA:   3'- -CGCUCa------CGG-CUCGCCuGCUCCUUGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.