Results 41 - 60 of 194 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6379 | 5' | -56.9 | NC_001847.1 | + | 132480 | 0.69 | 0.727569 |
Target: 5'- aCGGGU-CCGAGgcggaGGACGGGGAggACGGg -3' miRNA: 3'- cGCUCAcGGCUCg----CCUGCUCCU--UGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 51074 | 0.71 | 0.617398 |
Target: 5'- gGCGuucGUGCgCGGGCuGGuCGAGGAccGCGAc -3' miRNA: 3'- -CGCu--CACG-GCUCG-CCuGCUCCU--UGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 81069 | 0.75 | 0.374871 |
Target: 5'- gGCGGG-GCCuGGCuGGACGGGGAcgACGAa -3' miRNA: 3'- -CGCUCaCGGcUCG-CCUGCUCCU--UGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 67209 | 0.69 | 0.727569 |
Target: 5'- ---cGUGCCGAGCGG-CGGGcGcGCGGu -3' miRNA: 3'- cgcuCACGGCUCGCCuGCUC-CuUGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 131007 | 0.76 | 0.3435 |
Target: 5'- aGCGA-UGCCGGGCccgaGGACGAugGGGGCGAg -3' miRNA: 3'- -CGCUcACGGCUCG----CCUGCU--CCUUGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 68796 | 0.67 | 0.810957 |
Target: 5'- gGCGGccGCgCGAGCGGGCcgacggGGGGAACa- -3' miRNA: 3'- -CGCUcaCG-GCUCGCCUG------CUCCUUGcu -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 130718 | 0.74 | 0.425428 |
Target: 5'- cCGAG-GCCGAGgGGGCGgAGGcGCGGa -3' miRNA: 3'- cGCUCaCGGCUCgCCUGC-UCCuUGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 129264 | 0.68 | 0.802214 |
Target: 5'- cGCGAG-GCagGGGCGGGaaUGGGGAGgGGa -3' miRNA: 3'- -CGCUCaCGg-CUCGCCU--GCUCCUUgCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 131418 | 0.68 | 0.793321 |
Target: 5'- cGCGAGgcgGCCGcgcgcuacgcGGCGGccGCGGGGcccGCGGc -3' miRNA: 3'- -CGCUCa--CGGC----------UCGCC--UGCUCCu--UGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 84234 | 0.68 | 0.775115 |
Target: 5'- cCGGG-GCCGccGCGGGgGAGGAggGCGGc -3' miRNA: 3'- cGCUCaCGGCu-CGCCUgCUCCU--UGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 113127 | 0.68 | 0.75641 |
Target: 5'- aCGAGgagGaCGAggagGCGGACGAGGAGgGGg -3' miRNA: 3'- cGCUCa--CgGCU----CGCCUGCUCCUUgCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 134920 | 0.69 | 0.746892 |
Target: 5'- cGCGAGgcccggGCuCGGGCccccGGGCGccGGGGGCGGg -3' miRNA: 3'- -CGCUCa-----CG-GCUCG----CCUGC--UCCUUGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 57145 | 0.69 | 0.737275 |
Target: 5'- cGUGAcguacUGCCacGAGCuGGGCGAGGGGCGc -3' miRNA: 3'- -CGCUc----ACGG--CUCG-CCUGCUCCUUGCu -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 45142 | 0.69 | 0.707924 |
Target: 5'- cCGAgGUGCCG-GCGGugagcGCGGGGGACc- -3' miRNA: 3'- cGCU-CACGGCuCGCC-----UGCUCCUUGcu -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 52 | 0.7 | 0.678006 |
Target: 5'- gGCGcGUGCauugcGGCGGGCG-GGGGCGGg -3' miRNA: 3'- -CGCuCACGgc---UCGCCUGCuCCUUGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 27267 | 0.7 | 0.654833 |
Target: 5'- cGCGAGaGCCGGaugugaggcugcccGcCGGGCGAGaGGACGGc -3' miRNA: 3'- -CGCUCaCGGCU--------------C-GCCUGCUC-CUUGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 104960 | 0.71 | 0.627517 |
Target: 5'- gGCGAGcGCCGGGCGccagggcuCGGGGAagaGCGGg -3' miRNA: 3'- -CGCUCaCGGCUCGCcu------GCUCCU---UGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 103624 | 0.72 | 0.567108 |
Target: 5'- gGCGGGggaCGAcgccGCGGACGAGGA-CGAg -3' miRNA: 3'- -CGCUCacgGCU----CGCCUGCUCCUuGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 29338 | 0.72 | 0.527635 |
Target: 5'- cGCGAGUGCgCGGGCGGcCGuuGAaaacagcgGCGAc -3' miRNA: 3'- -CGCUCACG-GCUCGCCuGCucCU--------UGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 125593 | 0.73 | 0.498713 |
Target: 5'- gGCGAGgGaUCGGGgGGAUGGGGAugGGg -3' miRNA: 3'- -CGCUCaC-GGCUCgCCUGCUCCUugCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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