miRNA display CGI


Results 101 - 120 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6379 5' -56.9 NC_001847.1 + 58387 0.69 0.727569
Target:  5'- aGCGGGUGCCG-GCGGGC-AGcAGCu- -3'
miRNA:   3'- -CGCUCACGGCuCGCCUGcUCcUUGcu -5'
6379 5' -56.9 NC_001847.1 + 133589 0.69 0.727569
Target:  5'- cGCGGGcGCgcuauCGGGCGGGCGGGcuuGGGCGGc -3'
miRNA:   3'- -CGCUCaCG-----GCUCGCCUGCUC---CUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 37029 0.69 0.744017
Target:  5'- aGCGGGgcGCCGGGCucgcacucuagccuGGGCuGGGGGCGGc -3'
miRNA:   3'- -CGCUCa-CGGCUCG--------------CCUGcUCCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 96940 0.66 0.874565
Target:  5'- aGCGGGUcGCCGcuAGCGG-CGGcaaaguccGGGACGu -3'
miRNA:   3'- -CGCUCA-CGGC--UCGCCuGCU--------CCUUGCu -5'
6379 5' -56.9 NC_001847.1 + 76737 0.7 0.678006
Target:  5'- gGCGGGgaaggacgGUCGGGCgcucGGGCGGGGGGCa- -3'
miRNA:   3'- -CGCUCa-------CGGCUCG----CCUGCUCCUUGcu -5'
6379 5' -56.9 NC_001847.1 + 90803 0.7 0.678006
Target:  5'- aGCGAGaGCgaGAGCGGAgCGAgagcaaaggcGGGGCGAg -3'
miRNA:   3'- -CGCUCaCGg-CUCGCCU-GCU----------CCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 29667 0.69 0.727569
Target:  5'- aCGGGU-CCGAGgcggaGGACGGGGAggACGGg -3'
miRNA:   3'- cGCUCAcGGCUCg----CCUGCUCCU--UGCU- -5'
6379 5' -56.9 NC_001847.1 + 46341 0.69 0.717782
Target:  5'- cGCGGG-GCCGcgucGGCGGcauCGGGGGGCu- -3'
miRNA:   3'- -CGCUCaCGGC----UCGCCu--GCUCCUUGcu -5'
6379 5' -56.9 NC_001847.1 + 94502 0.67 0.819542
Target:  5'- cGCGAG-GCgCG-GCGGACGuGGGG-GAa -3'
miRNA:   3'- -CGCUCaCG-GCuCGCCUGCuCCUUgCU- -5'
6379 5' -56.9 NC_001847.1 + 32107 0.69 0.746892
Target:  5'- cGCGAGgcccggGCuCGGGCccccGGGCGccGGGGGCGGg -3'
miRNA:   3'- -CGCUCa-----CG-GCUCG----CCUGC--UCCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 12935 0.69 0.746892
Target:  5'- cGCGcGUGUCGucguGCGGugGGGcGGCGGg -3'
miRNA:   3'- -CGCuCACGGCu---CGCCugCUCcUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 27844 0.67 0.819542
Target:  5'- gGCGAGgacGCCGGcGCcagGGACGcgGGGGGCGc -3'
miRNA:   3'- -CGCUCa--CGGCU-CG---CCUGC--UCCUUGCu -5'
6379 5' -56.9 NC_001847.1 + 88549 0.67 0.810957
Target:  5'- cGCGAG-GCCGcGCcGGCGGGGcuGACGc -3'
miRNA:   3'- -CGCUCaCGGCuCGcCUGCUCC--UUGCu -5'
6379 5' -56.9 NC_001847.1 + 22714 0.69 0.717782
Target:  5'- gGCGAGggaUCGGGgGGAUG-GGGGCGAg -3'
miRNA:   3'- -CGCUCac-GGCUCgCCUGCuCCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 53704 0.67 0.810957
Target:  5'- cGCGAGcgcGCCGccGGCGGcuCGcGGGGCGGa -3'
miRNA:   3'- -CGCUCa--CGGC--UCGCCu-GCuCCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 33137 0.67 0.810957
Target:  5'- gGCGGGUgGUgGAGUGGGuCGAGG-GCGc -3'
miRNA:   3'- -CGCUCA-CGgCUCGCCU-GCUCCuUGCu -5'
6379 5' -56.9 NC_001847.1 + 62912 0.69 0.717782
Target:  5'- cGCGGGUGCucggggcccgCGGGCGGcuccucguCGGGGGGCa- -3'
miRNA:   3'- -CGCUCACG----------GCUCGCCu-------GCUCCUUGcu -5'
6379 5' -56.9 NC_001847.1 + 117308 0.67 0.81009
Target:  5'- cGCGA--GCCGcgaugggcgaccuAGCGG-CGGGGGGCGGc -3'
miRNA:   3'- -CGCUcaCGGC-------------UCGCCuGCUCCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 115668 0.69 0.746892
Target:  5'- cGCGuccGUGCgggUGAGCGGcuGCGcGGGGGCGAg -3'
miRNA:   3'- -CGCu--CACG---GCUCGCC--UGC-UCCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 31964 0.66 0.859817
Target:  5'- cGCGGcGcGCgGGGCGGGCcccGGGGcGCGAa -3'
miRNA:   3'- -CGCU-CaCGgCUCGCCUG---CUCCuUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.