miRNA display CGI


Results 121 - 140 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6379 5' -56.9 NC_001847.1 + 58387 0.69 0.727569
Target:  5'- aGCGGGUGCCG-GCGGGC-AGcAGCu- -3'
miRNA:   3'- -CGCUCACGGCuCGCCUGcUCcUUGcu -5'
6379 5' -56.9 NC_001847.1 + 133589 0.69 0.727569
Target:  5'- cGCGGGcGCgcuauCGGGCGGGCGGGcuuGGGCGGc -3'
miRNA:   3'- -CGCUCaCG-----GCUCGCCUGCUC---CUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 62912 0.69 0.717782
Target:  5'- cGCGGGUGCucggggcccgCGGGCGGcuccucguCGGGGGGCa- -3'
miRNA:   3'- -CGCUCACG----------GCUCGCCu-------GCUCCUUGcu -5'
6379 5' -56.9 NC_001847.1 + 46341 0.69 0.717782
Target:  5'- cGCGGG-GCCGcgucGGCGGcauCGGGGGGCu- -3'
miRNA:   3'- -CGCUCaCGGC----UCGCCu--GCUCCUUGcu -5'
6379 5' -56.9 NC_001847.1 + 22714 0.69 0.717782
Target:  5'- gGCGAGggaUCGGGgGGAUG-GGGGCGAg -3'
miRNA:   3'- -CGCUCac-GGCUCgCCUGCuCCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 90803 0.7 0.678006
Target:  5'- aGCGAGaGCgaGAGCGGAgCGAgagcaaaggcGGGGCGAg -3'
miRNA:   3'- -CGCUCaCGg-CUCGCCU-GCU----------CCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 96631 0.68 0.764885
Target:  5'- cGCGGGgGCCG-GCGGguacgcgucgugcGCGGGGGccgGCGGg -3'
miRNA:   3'- -CGCUCaCGGCuCGCC-------------UGCUCCU---UGCU- -5'
6379 5' -56.9 NC_001847.1 + 72994 0.68 0.775115
Target:  5'- cGCGGGagcugGCCGcagcGCGGGCGcGGAACc- -3'
miRNA:   3'- -CGCUCa----CGGCu---CGCCUGCuCCUUGcu -5'
6379 5' -56.9 NC_001847.1 + 32107 0.69 0.746892
Target:  5'- cGCGAGgcccggGCuCGGGCccccGGGCGccGGGGGCGGg -3'
miRNA:   3'- -CGCUCa-----CG-GCUCG----CCUGC--UCCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 33137 0.67 0.810957
Target:  5'- gGCGGGUgGUgGAGUGGGuCGAGG-GCGc -3'
miRNA:   3'- -CGCUCA-CGgCUCGCCU-GCUCCuUGCu -5'
6379 5' -56.9 NC_001847.1 + 117308 0.67 0.81009
Target:  5'- cGCGA--GCCGcgaugggcgaccuAGCGG-CGGGGGGCGGc -3'
miRNA:   3'- -CGCUcaCGGC-------------UCGCCuGCUCCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 8982 0.68 0.784285
Target:  5'- cCGGG-GgCGGGCaGACGGGGGugGGg -3'
miRNA:   3'- cGCUCaCgGCUCGcCUGCUCCUugCU- -5'
6379 5' -56.9 NC_001847.1 + 21908 0.68 0.784285
Target:  5'- -gGAGacgGCCGAggccGCGGGCGAGGcgGAgGAg -3'
miRNA:   3'- cgCUCa--CGGCU----CGCCUGCUCC--UUgCU- -5'
6379 5' -56.9 NC_001847.1 + 79566 0.68 0.783374
Target:  5'- cGCGGGgggcGCCGGGCucgcggccucuucGGGCG-GGGGCGc -3'
miRNA:   3'- -CGCUCa---CGGCUCG-------------CCUGCuCCUUGCu -5'
6379 5' -56.9 NC_001847.1 + 107514 1.11 0.00186
Target:  5'- cGCGAGUGCCGAGCGGACGAGGAACGAu -3'
miRNA:   3'- -CGCUCACGGCUCGCCUGCUCCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 22651 0.79 0.226208
Target:  5'- gGCGGGcuUGCCccGGGCGGGCGAGGGAuCGGg -3'
miRNA:   3'- -CGCUC--ACGG--CUCGCCUGCUCCUU-GCU- -5'
6379 5' -56.9 NC_001847.1 + 42729 0.79 0.231724
Target:  5'- gGCGGGcgGCCGcGCGGGCGGcGGGGCGGa -3'
miRNA:   3'- -CGCUCa-CGGCuCGCCUGCU-CCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 28194 0.76 0.3435
Target:  5'- aGCGA-UGCCGGGCccgaGGACGAugGGGGCGAg -3'
miRNA:   3'- -CGCUcACGGCUCG----CCUGCU--CCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 88256 0.75 0.408124
Target:  5'- cGCGGGgcGCCGGGCGGGgacggGGGGAGCGc -3'
miRNA:   3'- -CGCUCa-CGGCUCGCCUg----CUCCUUGCu -5'
6379 5' -56.9 NC_001847.1 + 32944 0.74 0.452182
Target:  5'- gGCGGG-GCCGGGgGGGCgGAGGAGgcCGGg -3'
miRNA:   3'- -CGCUCaCGGCUCgCCUG-CUCCUU--GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.