Results 141 - 160 of 194 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6379 | 5' | -56.9 | NC_001847.1 | + | 88256 | 0.75 | 0.408124 |
Target: 5'- cGCGGGgcGCCGGGCGGGgacggGGGGAGCGc -3' miRNA: 3'- -CGCUCa-CGGCUCGCCUg----CUCCUUGCu -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 28194 | 0.76 | 0.3435 |
Target: 5'- aGCGA-UGCCGGGCccgaGGACGAugGGGGCGAg -3' miRNA: 3'- -CGCUcACGGCUCG----CCUGCU--CCUUGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 42729 | 0.79 | 0.231724 |
Target: 5'- gGCGGGcgGCCGcGCGGGCGGcGGGGCGGa -3' miRNA: 3'- -CGCUCa-CGGCuCGCCUGCU-CCUUGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 22651 | 0.79 | 0.226208 |
Target: 5'- gGCGGGcuUGCCccGGGCGGGCGAGGGAuCGGg -3' miRNA: 3'- -CGCUC--ACGG--CUCGCCUGCUCCUU-GCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 107514 | 1.11 | 0.00186 |
Target: 5'- cGCGAGUGCCGAGCGGACGAGGAACGAu -3' miRNA: 3'- -CGCUCACGGCUCGCCUGCUCCUUGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 27728 | 0.71 | 0.596192 |
Target: 5'- cCGAGcugGCCGAGCuguggcggaugguGGGCGGGGAggacGCGGa -3' miRNA: 3'- cGCUCa--CGGCUCG-------------CCUGCUCCU----UGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 26506 | 0.71 | 0.5972 |
Target: 5'- gGCGGGccUGCCGGGCgcgGGGCcGGGGGCGu -3' miRNA: 3'- -CGCUC--ACGGCUCG---CCUGcUCCUUGCu -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 10314 | 0.68 | 0.75641 |
Target: 5'- aCGAGgagGaCGAggagGCGGACGAGGAGgGGg -3' miRNA: 3'- cGCUCa--CgGCU----CGCCUGCUCCUUgCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 2297 | 0.68 | 0.75641 |
Target: 5'- gGCGGGgccGCCGGGCGGcAUGGGccccagcacgcGGGCGGg -3' miRNA: 3'- -CGCUCa--CGGCUCGCC-UGCUC-----------CUUGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 115668 | 0.69 | 0.746892 |
Target: 5'- cGCGuccGUGCgggUGAGCGGcuGCGcGGGGGCGAg -3' miRNA: 3'- -CGCu--CACG---GCUCGCC--UGC-UCCUUGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 12935 | 0.69 | 0.746892 |
Target: 5'- cGCGcGUGUCGucguGCGGugGGGcGGCGGg -3' miRNA: 3'- -CGCuCACGGCu---CGCCugCUCcUUGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 32107 | 0.69 | 0.746892 |
Target: 5'- cGCGAGgcccggGCuCGGGCccccGGGCGccGGGGGCGGg -3' miRNA: 3'- -CGCUCa-----CG-GCUCG----CCUGC--UCCUUGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 37029 | 0.69 | 0.744017 |
Target: 5'- aGCGGGgcGCCGGGCucgcacucuagccuGGGCuGGGGGCGGc -3' miRNA: 3'- -CGCUCa-CGGCUCG--------------CCUGcUCCUUGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 58387 | 0.69 | 0.727569 |
Target: 5'- aGCGGGUGCCG-GCGGGC-AGcAGCu- -3' miRNA: 3'- -CGCUCACGGCuCGCCUGcUCcUUGcu -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 133589 | 0.69 | 0.727569 |
Target: 5'- cGCGGGcGCgcuauCGGGCGGGCGGGcuuGGGCGGc -3' miRNA: 3'- -CGCUCaCG-----GCUCGCCUGCUC---CUUGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 29667 | 0.69 | 0.727569 |
Target: 5'- aCGGGU-CCGAGgcggaGGACGGGGAggACGGg -3' miRNA: 3'- cGCUCAcGGCUCg----CCUGCUCCU--UGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 62912 | 0.69 | 0.717782 |
Target: 5'- cGCGGGUGCucggggcccgCGGGCGGcuccucguCGGGGGGCa- -3' miRNA: 3'- -CGCUCACG----------GCUCGCCu-------GCUCCUUGcu -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 46341 | 0.69 | 0.717782 |
Target: 5'- cGCGGG-GCCGcgucGGCGGcauCGGGGGGCu- -3' miRNA: 3'- -CGCUCaCGGC----UCGCCu--GCUCCUUGcu -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 90803 | 0.7 | 0.678006 |
Target: 5'- aGCGAGaGCgaGAGCGGAgCGAgagcaaaggcGGGGCGAg -3' miRNA: 3'- -CGCUCaCGg-CUCGCCU-GCU----------CCUUGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 76737 | 0.7 | 0.678006 |
Target: 5'- gGCGGGgaaggacgGUCGGGCgcucGGGCGGGGGGCa- -3' miRNA: 3'- -CGCUCa-------CGGCUCG----CCUGCUCCUUGcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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