miRNA display CGI


Results 81 - 100 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6379 5' -56.9 NC_001847.1 + 8982 0.68 0.784285
Target:  5'- cCGGG-GgCGGGCaGACGGGGGugGGg -3'
miRNA:   3'- cGCUCaCgGCUCGcCUGCUCCUugCU- -5'
6379 5' -56.9 NC_001847.1 + 79566 0.68 0.783374
Target:  5'- cGCGGGgggcGCCGGGCucgcggccucuucGGGCG-GGGGCGc -3'
miRNA:   3'- -CGCUCa---CGGCUCG-------------CCUGCuCCUUGCu -5'
6379 5' -56.9 NC_001847.1 + 96380 0.68 0.793321
Target:  5'- gGCGGG-GCCGgcGGCGGcaaugGCGGGGccGGCGGc -3'
miRNA:   3'- -CGCUCaCGGC--UCGCC-----UGCUCC--UUGCU- -5'
6379 5' -56.9 NC_001847.1 + 28605 0.68 0.793321
Target:  5'- cGCGAGgcgGCCGcgcgcuacgcGGCGGccGCGGGGcccGCGGc -3'
miRNA:   3'- -CGCUCa--CGGC----------UCGCC--UGCUCCu--UGCU- -5'
6379 5' -56.9 NC_001847.1 + 94502 0.67 0.819542
Target:  5'- cGCGAG-GCgCG-GCGGACGuGGGG-GAa -3'
miRNA:   3'- -CGCUCaCG-GCuCGCCUGCuCCUUgCU- -5'
6379 5' -56.9 NC_001847.1 + 27844 0.67 0.819542
Target:  5'- gGCGAGgacGCCGGcGCcagGGACGcgGGGGGCGc -3'
miRNA:   3'- -CGCUCa--CGGCU-CG---CCUGC--UCCUUGCu -5'
6379 5' -56.9 NC_001847.1 + 88549 0.67 0.810957
Target:  5'- cGCGAG-GCCGcGCcGGCGGGGcuGACGc -3'
miRNA:   3'- -CGCUCaCGGCuCGcCUGCUCC--UUGCu -5'
6379 5' -56.9 NC_001847.1 + 53704 0.67 0.810957
Target:  5'- cGCGAGcgcGCCGccGGCGGcuCGcGGGGCGGa -3'
miRNA:   3'- -CGCUCa--CGGC--UCGCCu-GCuCCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 33137 0.67 0.810957
Target:  5'- gGCGGGUgGUgGAGUGGGuCGAGG-GCGc -3'
miRNA:   3'- -CGCUCA-CGgCUCGCCU-GCUCCuUGCu -5'
6379 5' -56.9 NC_001847.1 + 117308 0.67 0.81009
Target:  5'- cGCGA--GCCGcgaugggcgaccuAGCGG-CGGGGGGCGGc -3'
miRNA:   3'- -CGCUcaCGGC-------------UCGCCuGCUCCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 32906 0.68 0.802214
Target:  5'- gGCGGGgaaGCCGGggccGCGGACGGGaGGAgGc -3'
miRNA:   3'- -CGCUCa--CGGCU----CGCCUGCUC-CUUgCu -5'
6379 5' -56.9 NC_001847.1 + 97830 0.68 0.802214
Target:  5'- gGCGcGUGCCGccacacggcuAGCacgucGGACGGGGAaagGCGGc -3'
miRNA:   3'- -CGCuCACGGC----------UCG-----CCUGCUCCU---UGCU- -5'
6379 5' -56.9 NC_001847.1 + 26451 0.68 0.802214
Target:  5'- cGCGAG-GCagGGGCGGGaaUGGGGAGgGGa -3'
miRNA:   3'- -CGCUCaCGg-CUCGCCU--GCUCCUUgCU- -5'
6379 5' -56.9 NC_001847.1 + 75484 0.68 0.802214
Target:  5'- -aGAGcGCaCGGGCGGGCGc-GAGCGGg -3'
miRNA:   3'- cgCUCaCG-GCUCGCCUGCucCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 34507 0.73 0.489229
Target:  5'- aGCGAG-GCCGAcGCGGACGGcGccGGCGAu -3'
miRNA:   3'- -CGCUCaCGGCU-CGCCUGCUcC--UUGCU- -5'
6379 5' -56.9 NC_001847.1 + 130718 0.74 0.425428
Target:  5'- cCGAG-GCCGAGgGGGCGgAGGcGCGGa -3'
miRNA:   3'- cGCUCaCGGCUCgCCUGC-UCCuUGCU- -5'
6379 5' -56.9 NC_001847.1 + 34646 0.75 0.383011
Target:  5'- cCGAG-GCCGAGCGGcGCGccgaGGGGGCGGc -3'
miRNA:   3'- cGCUCaCGGCUCGCC-UGC----UCCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 81069 0.75 0.374871
Target:  5'- gGCGGG-GCCuGGCuGGACGGGGAcgACGAa -3'
miRNA:   3'- -CGCUCaCGGcUCG-CCUGCUCCU--UGCU- -5'
6379 5' -56.9 NC_001847.1 + 131007 0.76 0.3435
Target:  5'- aGCGA-UGCCGGGCccgaGGACGAugGGGGCGAg -3'
miRNA:   3'- -CGCUcACGGCUCG----CCUGCU--CCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 26872 0.66 0.888465
Target:  5'- cCGAGUGCCuGAuGCGGgaacGCGcGGcAGCGGa -3'
miRNA:   3'- cGCUCACGG-CU-CGCC----UGCuCC-UUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.