Results 21 - 37 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
638 | 3' | -62.6 | AC_000017.1 | + | 24004 | 0.69 | 0.156898 |
Target: 5'- cGCGCCGCaCCGCguCCGCGCUcGg-GGGUg -3' miRNA: 3'- -CGUGGUG-GGCG--GGCGCGGaCgaUCCG- -5' |
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638 | 3' | -62.6 | AC_000017.1 | + | 17027 | 0.69 | 0.156898 |
Target: 5'- aGCACCugCUGCagugucaCGgGCUuuagGCUAGGUg -3' miRNA: 3'- -CGUGGugGGCGg------GCgCGGa---CGAUCCG- -5' |
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638 | 3' | -62.6 | AC_000017.1 | + | 23905 | 0.69 | 0.152712 |
Target: 5'- cGCGCaCACCCaGCCCGCGgCCaucaacCUcGGCg -3' miRNA: 3'- -CGUG-GUGGG-CGGGCGC-GGac----GAuCCG- -5' |
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638 | 3' | -62.6 | AC_000017.1 | + | 9849 | 0.69 | 0.148627 |
Target: 5'- aGCACCAuguCCUuggGUCCG-GCCUGCUgaaugcgcAGGCg -3' miRNA: 3'- -CGUGGU---GGG---CGGGCgCGGACGA--------UCCG- -5' |
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638 | 3' | -62.6 | AC_000017.1 | + | 12145 | 0.7 | 0.140756 |
Target: 5'- uCGCCG-CUGCCCGUGCCaGCcaGGGCc -3' miRNA: 3'- cGUGGUgGGCGGGCGCGGaCGa-UCCG- -5' |
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638 | 3' | -62.6 | AC_000017.1 | + | 8500 | 0.7 | 0.125802 |
Target: 5'- gGUAUCACCUggaccuaGCCCGCGCCcugacccggcuaUGCgAGGUa -3' miRNA: 3'- -CGUGGUGGG-------CGGGCGCGG------------ACGaUCCG- -5' |
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638 | 3' | -62.6 | AC_000017.1 | + | 17345 | 0.7 | 0.122722 |
Target: 5'- aGCgGCCGCCUGCaCCGCGgcaUCUGCcaccgccgAGGCg -3' miRNA: 3'- -CG-UGGUGGGCG-GGCGC---GGACGa-------UCCG- -5' |
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638 | 3' | -62.6 | AC_000017.1 | + | 8727 | 0.71 | 0.112956 |
Target: 5'- aGCACCAgcuCCUGCCCGCGC--GC--GGCg -3' miRNA: 3'- -CGUGGU---GGGCGGGCGCGgaCGauCCG- -5' |
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638 | 3' | -62.6 | AC_000017.1 | + | 7291 | 0.71 | 0.109865 |
Target: 5'- cGCGCUACCCGUagaaaagggaugCUGCGCCUaCcAGGCc -3' miRNA: 3'- -CGUGGUGGGCG------------GGCGCGGAcGaUCCG- -5' |
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638 | 3' | -62.6 | AC_000017.1 | + | 8592 | 0.72 | 0.102196 |
Target: 5'- cCACCGCCCGCCgcgcgguaccguaguCGCGCC-GCgGGGa -3' miRNA: 3'- cGUGGUGGGCGG---------------GCGCGGaCGaUCCg -5' |
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638 | 3' | -62.6 | AC_000017.1 | + | 15106 | 0.72 | 0.100219 |
Target: 5'- uGCGCCAccCCCGCCCuguucgguGUcaucuuucaagcuuGCCUGgUAGGCg -3' miRNA: 3'- -CGUGGU--GGGCGGG--------CG--------------CGGACgAUCCG- -5' |
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638 | 3' | -62.6 | AC_000017.1 | + | 10842 | 0.72 | 0.092927 |
Target: 5'- cGCAgCAgCCG-CCGCGCCUGgaAGGa -3' miRNA: 3'- -CGUgGUgGGCgGGCGCGGACgaUCCg -5' |
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638 | 3' | -62.6 | AC_000017.1 | + | 4774 | 0.73 | 0.074167 |
Target: 5'- gGCACCcUCCGCCCGCGCUuUGUaaaaauGGCc -3' miRNA: 3'- -CGUGGuGGGCGGGCGCGG-ACGau----CCG- -5' |
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638 | 3' | -62.6 | AC_000017.1 | + | 26268 | 0.73 | 0.073957 |
Target: 5'- gGUGCCAUCCugggaagcaaggGCCCGCGgCUGCUgcugauaGGGCu -3' miRNA: 3'- -CGUGGUGGG------------CGGGCGCgGACGA-------UCCG- -5' |
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638 | 3' | -62.6 | AC_000017.1 | + | 18482 | 0.77 | 0.040319 |
Target: 5'- cCACCACCCGUCCcaucGCGCCcauggcuaccggagUGUUGGGCc -3' miRNA: 3'- cGUGGUGGGCGGG----CGCGG--------------ACGAUCCG- -5' |
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638 | 3' | -62.6 | AC_000017.1 | + | 6707 | 0.82 | 0.01605 |
Target: 5'- cGCGCUugCCGCCCGCGCaugGCagcAGGCg -3' miRNA: 3'- -CGUGGugGGCGGGCGCGga-CGa--UCCG- -5' |
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638 | 3' | -62.6 | AC_000017.1 | + | 13745 | 1.13 | 0.000052 |
Target: 5'- cGCACCACCCGCCCGCGCCUGCUAGGCg -3' miRNA: 3'- -CGUGGUGGGCGGGCGCGGACGAUCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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