Results 81 - 100 of 106 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6380 | 3' | -53.9 | NC_001847.1 | + | 10507 | 0.69 | 0.854023 |
Target: 5'- cGGcCCCGcgcuGCuGCgGGCCAUGGAG-CGg -3' miRNA: 3'- -CCaGGGCu---UG-CGgCCGGUACUUUaGC- -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 134185 | 0.69 | 0.846039 |
Target: 5'- cGG-CCCGggUGCCGGCgCA----GUCGu -3' miRNA: 3'- -CCaGGGCuuGCGGCCG-GUacuuUAGC- -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 23696 | 0.69 | 0.846039 |
Target: 5'- uGGUCCaCGAACggggcgcgGUCGGCgCA-GAGGUCGa -3' miRNA: 3'- -CCAGG-GCUUG--------CGGCCG-GUaCUUUAGC- -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 21778 | 0.7 | 0.837857 |
Target: 5'- cGGgCCCG-GCGCCGGCCGggcgcGGGUCc -3' miRNA: 3'- -CCaGGGCuUGCGGCCGGUac---UUUAGc -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 34595 | 0.7 | 0.826085 |
Target: 5'- aGG-CCCGGGCGCUGGCgCGgcggcgcgccgagGAAGUCc -3' miRNA: 3'- -CCaGGGCUUGCGGCCG-GUa------------CUUUAGc -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 119842 | 0.7 | 0.812201 |
Target: 5'- cGGcCCCcGACGCCGuGCCGgucagcgucGGGAUCGg -3' miRNA: 3'- -CCaGGGcUUGCGGC-CGGUa--------CUUUAGC- -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 50026 | 0.7 | 0.837857 |
Target: 5'- gGGcCCCGGGCGC--GCCGUGAuGAUCa -3' miRNA: 3'- -CCaGGGCUUGCGgcCGGUACU-UUAGc -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 82122 | 0.7 | 0.837857 |
Target: 5'- aGG-CCCGAGCGCgcagCGGCCGccGcuGUCGg -3' miRNA: 3'- -CCaGGGCUUGCG----GCCGGUa-CuuUAGC- -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 124591 | 0.7 | 0.837857 |
Target: 5'- cGGgCCCG-GCGCCGGCCGggcgcGGGUCc -3' miRNA: 3'- -CCaGGGCuUGCGGCCGGUac---UUUAGc -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 54380 | 0.7 | 0.812201 |
Target: 5'- cGUCCCGGuccGCGCCGGCgCGgaccAAGUCc -3' miRNA: 3'- cCAGGGCU---UGCGGCCG-GUac--UUUAGc -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 5319 | 0.71 | 0.78505 |
Target: 5'- gGGUCCUggcaGAAgGCCGGCCG----GUCGg -3' miRNA: 3'- -CCAGGG----CUUgCGGCCGGUacuuUAGC- -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 39752 | 0.71 | 0.775708 |
Target: 5'- uGUCCCcGGCGCCGGCCucaGAGccggCGg -3' miRNA: 3'- cCAGGGcUUGCGGCCGGua-CUUua--GC- -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 115299 | 0.71 | 0.794252 |
Target: 5'- --cCCCGGGCGCgGGCCAaGGGcgcuguGUCGa -3' miRNA: 3'- ccaGGGCUUGCGgCCGGUaCUU------UAGC- -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 77487 | 0.71 | 0.766236 |
Target: 5'- cGG-CCCGGccCGCCGGCCc--GAGUCGg -3' miRNA: 3'- -CCaGGGCUu-GCGGCCGGuacUUUAGC- -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 91747 | 0.71 | 0.794252 |
Target: 5'- cGcCCUGcgcGCGUCGGCCGUGaAGAUCGc -3' miRNA: 3'- cCaGGGCu--UGCGGCCGGUAC-UUUAGC- -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 108132 | 0.71 | 0.78505 |
Target: 5'- gGGUCCUggcaGAAgGCCGGCCG----GUCGg -3' miRNA: 3'- -CCAGGG----CUUgCGGCCGGUacuuUAGC- -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 133026 | 0.72 | 0.707183 |
Target: 5'- --cCCCGAgGCGCUGGCC--GAGAUCGc -3' miRNA: 3'- ccaGGGCU-UGCGGCCGGuaCUUUAGC- -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 30213 | 0.72 | 0.707183 |
Target: 5'- --cCCCGAgGCGCUGGCC--GAGAUCGc -3' miRNA: 3'- ccaGGGCU-UGCGGCCGGuaCUUUAGC- -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 91712 | 0.72 | 0.723242 |
Target: 5'- gGGUCgCG-ACGCCGGCCAgcagcagcagcgcGAGGUCc -3' miRNA: 3'- -CCAGgGCuUGCGGCCGGUa------------CUUUAGc -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 78059 | 0.73 | 0.676655 |
Target: 5'- cGGUCCagCGcAGCGCUGGCCGccgcgcUGggGUUGa -3' miRNA: 3'- -CCAGG--GC-UUGCGGCCGGU------ACuuUAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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