miRNA display CGI


Results 61 - 80 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6380 3' -53.9 NC_001847.1 + 134206 0.67 0.937432
Target:  5'- nGUcCCCGGGCGCgGGCUcgGGcuUCc -3'
miRNA:   3'- cCA-GGGCUUGCGgCCGGuaCUuuAGc -5'
6380 3' -53.9 NC_001847.1 + 59982 0.67 0.937432
Target:  5'- uGGUCCCGAcGCGgCGGCCu-------- -3'
miRNA:   3'- -CCAGGGCU-UGCgGCCGGuacuuuagc -5'
6380 3' -53.9 NC_001847.1 + 77041 0.67 0.937432
Target:  5'- --cCCCG-ACGUCGGCCAUcGGAAg-- -3'
miRNA:   3'- ccaGGGCuUGCGGCCGGUA-CUUUagc -5'
6380 3' -53.9 NC_001847.1 + 31393 0.67 0.937432
Target:  5'- nGUcCCCGGGCGCgGGCUcgGGcuUCc -3'
miRNA:   3'- cCA-GGGCUUGCGgCCGGuaCUuuAGc -5'
6380 3' -53.9 NC_001847.1 + 769 0.67 0.937432
Target:  5'- cGG-CCCGccgccggcGGCGCCGGCCucgucGUCGu -3'
miRNA:   3'- -CCaGGGC--------UUGCGGCCGGuacuuUAGC- -5'
6380 3' -53.9 NC_001847.1 + 103582 0.67 0.937432
Target:  5'- cGG-CCCGccgccggcGGCGCCGGCCucgucGUCGu -3'
miRNA:   3'- -CCaGGGC--------UUGCGGCCGGuacuuUAGC- -5'
6380 3' -53.9 NC_001847.1 + 58746 0.67 0.942177
Target:  5'- cGG-CCCGAcagcgGCGgCGGCCGcGAcGGUCGc -3'
miRNA:   3'- -CCaGGGCU-----UGCgGCCGGUaCU-UUAGC- -5'
6380 3' -53.9 NC_001847.1 + 18574 0.67 0.942177
Target:  5'- cGG-CCCGugUGCCGcGCCA--AAGUCGc -3'
miRNA:   3'- -CCaGGGCuuGCGGC-CGGUacUUUAGC- -5'
6380 3' -53.9 NC_001847.1 + 41403 0.66 0.945356
Target:  5'- -cUCCCGGACcgcgcggucuagcaGCCGGCCGgugcgaUGcGAGUCGc -3'
miRNA:   3'- ccAGGGCUUG--------------CGGCCGGU------AC-UUUAGC- -5'
6380 3' -53.9 NC_001847.1 + 142 0.66 0.946683
Target:  5'- gGGcCUCGGGCcCCGGCCggGggGcCGg -3'
miRNA:   3'- -CCaGGGCUUGcGGCCGGuaCuuUaGC- -5'
6380 3' -53.9 NC_001847.1 + 66171 0.66 0.946683
Target:  5'- -cUCCCGGgcugGCGCCGGCCGc------- -3'
miRNA:   3'- ccAGGGCU----UGCGGCCGGUacuuuagc -5'
6380 3' -53.9 NC_001847.1 + 130619 0.66 0.946683
Target:  5'- gGGcCaCCGAggGCGCCgaGGCCGaagacgcgGAGAUCGg -3'
miRNA:   3'- -CCaG-GGCU--UGCGG--CCGGUa-------CUUUAGC- -5'
6380 3' -53.9 NC_001847.1 + 934 0.66 0.946683
Target:  5'- cGGgaagCCCGAGC-CCGcGCCcgGGGA-CGa -3'
miRNA:   3'- -CCa---GGGCUUGcGGC-CGGuaCUUUaGC- -5'
6380 3' -53.9 NC_001847.1 + 103747 0.66 0.946683
Target:  5'- cGGgaagCCCGAGC-CCGcGCCcgGGGA-CGa -3'
miRNA:   3'- -CCa---GGGCUUGcGGC-CGGuaCUUUaGC- -5'
6380 3' -53.9 NC_001847.1 + 55440 0.66 0.946683
Target:  5'- cGGUCCUGcAGCGCCuggcGCCGgcgGGGcgCGc -3'
miRNA:   3'- -CCAGGGC-UUGCGGc---CGGUa--CUUuaGC- -5'
6380 3' -53.9 NC_001847.1 + 102955 0.66 0.946683
Target:  5'- gGGcCUCGGGCcCCGGCCggGggGcCGg -3'
miRNA:   3'- -CCaGGGCUUGcGGCCGGuaCuuUaGC- -5'
6380 3' -53.9 NC_001847.1 + 95935 0.66 0.946683
Target:  5'- --gCUCGAA-GCUGGCCAUGAccAUCGc -3'
miRNA:   3'- ccaGGGCUUgCGGCCGGUACUu-UAGC- -5'
6380 3' -53.9 NC_001847.1 + 27806 0.66 0.946683
Target:  5'- gGGcCaCCGAggGCGCCgaGGCCGaagacgcgGAGAUCGg -3'
miRNA:   3'- -CCaG-GGCU--UGCGG--CCGGUa-------CUUUAGC- -5'
6380 3' -53.9 NC_001847.1 + 50834 0.66 0.950951
Target:  5'- gGGgcgcugCCCGcgccggggGGCGCUGGUgAUGAcGUCGg -3'
miRNA:   3'- -CCa-----GGGC--------UUGCGGCCGgUACUuUAGC- -5'
6380 3' -53.9 NC_001847.1 + 79092 0.66 0.950951
Target:  5'- uGUgCCCGuGCGCCGcGCCGUGccuGUgGa -3'
miRNA:   3'- cCA-GGGCuUGCGGC-CGGUACuu-UAgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.