Results 61 - 80 of 106 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6380 | 3' | -53.9 | NC_001847.1 | + | 32080 | 0.67 | 0.92174 |
Target: 5'- cGGgccCCUGGGCGCCGGgCGUcgGGGcgCGa -3' miRNA: 3'- -CCa--GGGCUUGCGGCCgGUA--CUUuaGC- -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 115876 | 0.67 | 0.92174 |
Target: 5'- aGGUCgCGc-CGCCGGCCA-GAAccgGUCc -3' miRNA: 3'- -CCAGgGCuuGCGGCCGGUaCUU---UAGc -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 134893 | 0.67 | 0.92174 |
Target: 5'- cGGgccCCUGGGCGCCGGgCGUcgGGGcgCGa -3' miRNA: 3'- -CCa--GGGCUUGCGGCCgGUA--CUUuaGC- -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 50866 | 0.68 | 0.916023 |
Target: 5'- cGGcgCCCGGGCGCCGacgagaacGCCAgGAGcUCa -3' miRNA: 3'- -CCa-GGGCUUGCGGC--------CGGUaCUUuAGc -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 71874 | 0.68 | 0.916023 |
Target: 5'- cGG-CCgCGAGCGCgCGGCCcguUGuuGUCu -3' miRNA: 3'- -CCaGG-GCUUGCG-GCCGGu--ACuuUAGc -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 106797 | 0.68 | 0.916023 |
Target: 5'- cGGgggCCCGGGCGCgCGGCCccgcGggG-CGc -3' miRNA: 3'- -CCa--GGGCUUGCG-GCCGGua--CuuUaGC- -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 14794 | 0.68 | 0.910064 |
Target: 5'- cGGUCCCGuuguAGCGCCgcccGGCCggGAGc--- -3' miRNA: 3'- -CCAGGGC----UUGCGG----CCGGuaCUUuagc -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 3587 | 0.68 | 0.903865 |
Target: 5'- aGGUCCgGGcccgcgagcuucGCGCUcugcagccaGGCCAUGgcGUCGc -3' miRNA: 3'- -CCAGGgCU------------UGCGG---------CCGGUACuuUAGC- -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 106400 | 0.68 | 0.903865 |
Target: 5'- aGGUCCgGGcccgcgagcuucGCGCUcugcagccaGGCCAUGgcGUCGc -3' miRNA: 3'- -CCAGGgCU------------UGCGG---------CCGGUACuuUAGC- -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 78337 | 0.68 | 0.903865 |
Target: 5'- --cCCCaGGcGCGCCGGCCccGUGAGcgCGa -3' miRNA: 3'- ccaGGG-CU-UGCGGCCGG--UACUUuaGC- -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 52929 | 0.68 | 0.897428 |
Target: 5'- gGGgcgCCCgcGAAgGCCGuGCCGguuaagGAAGUCGa -3' miRNA: 3'- -CCa--GGG--CUUgCGGC-CGGUa-----CUUUAGC- -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 41521 | 0.68 | 0.897428 |
Target: 5'- cGUCCgCGGccGCGCCGGCCG-GAGc--- -3' miRNA: 3'- cCAGG-GCU--UGCGGCCGGUaCUUuagc -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 12014 | 0.68 | 0.897428 |
Target: 5'- uGGcUCUgGGGCGCCGGC---GAGGUCGu -3' miRNA: 3'- -CC-AGGgCUUGCGGCCGguaCUUUAGC- -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 75388 | 0.68 | 0.890757 |
Target: 5'- cGG-CaCCGGACG-CGGCCAgcGAGUCGa -3' miRNA: 3'- -CCaG-GGCUUGCgGCCGGUacUUUAGC- -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 132279 | 0.69 | 0.883854 |
Target: 5'- cGG-CCCGcGCGUCGGCC-UGGGcgCu -3' miRNA: 3'- -CCaGGGCuUGCGGCCGGuACUUuaGc -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 29466 | 0.69 | 0.883854 |
Target: 5'- cGG-CCCGcGCGUCGGCC-UGGGcgCu -3' miRNA: 3'- -CCaGGGCuUGCGGCCGGuACUUuaGc -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 58753 | 0.69 | 0.876724 |
Target: 5'- cGGcCCCcGGCGCCccccccgaGGCCGUGAAGaggCGa -3' miRNA: 3'- -CCaGGGcUUGCGG--------CCGGUACUUUa--GC- -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 10507 | 0.69 | 0.854023 |
Target: 5'- cGGcCCCGcgcuGCuGCgGGCCAUGGAG-CGg -3' miRNA: 3'- -CCaGGGCu---UG-CGgCCGGUACUUUaGC- -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 55891 | 0.69 | 0.854023 |
Target: 5'- cGG-CCCG-ACGCCGGCUAgcagcUCGg -3' miRNA: 3'- -CCaGGGCuUGCGGCCGGUacuuuAGC- -5' |
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6380 | 3' | -53.9 | NC_001847.1 | + | 91762 | 0.69 | 0.851649 |
Target: 5'- cGGUCCgCGGgcgcuccgucggcgGCGCUGGCCGcGGAcgcuucGUCGg -3' miRNA: 3'- -CCAGG-GCU--------------UGCGGCCGGUaCUU------UAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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