miRNA display CGI


Results 41 - 60 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6380 3' -53.9 NC_001847.1 + 52275 0.67 0.92174
Target:  5'- cGUgCCCGcGCGCCGGCUuuGUGuGcgCGa -3'
miRNA:   3'- cCA-GGGCuUGCGGCCGG--UACuUuaGC- -5'
6380 3' -53.9 NC_001847.1 + 52929 0.68 0.897428
Target:  5'- gGGgcgCCCgcGAAgGCCGuGCCGguuaagGAAGUCGa -3'
miRNA:   3'- -CCa--GGG--CUUgCGGC-CGGUa-----CUUUAGC- -5'
6380 3' -53.9 NC_001847.1 + 54380 0.7 0.812201
Target:  5'- cGUCCCGGuccGCGCCGGCgCGgaccAAGUCc -3'
miRNA:   3'- cCAGGGCU---UGCGGCCG-GUac--UUUAGc -5'
6380 3' -53.9 NC_001847.1 + 55440 0.66 0.946683
Target:  5'- cGGUCCUGcAGCGCCuggcGCCGgcgGGGcgCGc -3'
miRNA:   3'- -CCAGGGC-UUGCGGc---CGGUa--CUUuaGC- -5'
6380 3' -53.9 NC_001847.1 + 55891 0.69 0.854023
Target:  5'- cGG-CCCG-ACGCCGGCUAgcagcUCGg -3'
miRNA:   3'- -CCaGGGCuUGCGGCCGGUacuuuAGC- -5'
6380 3' -53.9 NC_001847.1 + 56887 0.66 0.953798
Target:  5'- cGGgCCCGccggcgacggcGACGCCGGCgggcgggugacuacCGUGAGcUCGg -3'
miRNA:   3'- -CCaGGGC-----------UUGCGGCCG--------------GUACUUuAGC- -5'
6380 3' -53.9 NC_001847.1 + 58746 0.67 0.942177
Target:  5'- cGG-CCCGAcagcgGCGgCGGCCGcGAcGGUCGc -3'
miRNA:   3'- -CCaGGGCU-----UGCgGCCGGUaCU-UUAGC- -5'
6380 3' -53.9 NC_001847.1 + 58753 0.69 0.876724
Target:  5'- cGGcCCCcGGCGCCccccccgaGGCCGUGAAGaggCGa -3'
miRNA:   3'- -CCaGGGcUUGCGG--------CCGGUACUUUa--GC- -5'
6380 3' -53.9 NC_001847.1 + 59982 0.67 0.937432
Target:  5'- uGGUCCCGAcGCGgCGGCCu-------- -3'
miRNA:   3'- -CCAGGGCU-UGCgGCCGGuacuuuagc -5'
6380 3' -53.9 NC_001847.1 + 62778 0.67 0.927213
Target:  5'- ---aCCGAgguGCGCuCGGCCAUGuuGGUCa -3'
miRNA:   3'- ccagGGCU---UGCG-GCCGGUACu-UUAGc -5'
6380 3' -53.9 NC_001847.1 + 64742 0.66 0.962362
Target:  5'- -aUUCCGGACaccCCGGCCGUacAGUCGc -3'
miRNA:   3'- ccAGGGCUUGc--GGCCGGUAcuUUAGC- -5'
6380 3' -53.9 NC_001847.1 + 66171 0.66 0.946683
Target:  5'- -cUCCCGGgcugGCGCCGGCCGc------- -3'
miRNA:   3'- ccAGGGCU----UGCGGCCGGUacuuuagc -5'
6380 3' -53.9 NC_001847.1 + 66342 0.67 0.927213
Target:  5'- uGGggCgCGGGCGCC-GCCGUGGcGAUCGu -3'
miRNA:   3'- -CCa-GgGCUUGCGGcCGGUACU-UUAGC- -5'
6380 3' -53.9 NC_001847.1 + 67519 0.66 0.954984
Target:  5'- cGGUCgCGGACG-CGGCCAacGAcAUCc -3'
miRNA:   3'- -CCAGgGCUUGCgGCCGGUa-CUuUAGc -5'
6380 3' -53.9 NC_001847.1 + 70694 0.67 0.927213
Target:  5'- cGGgCCCGGG-GCUGGCCGUGGc---- -3'
miRNA:   3'- -CCaGGGCUUgCGGCCGGUACUuuagc -5'
6380 3' -53.9 NC_001847.1 + 71874 0.68 0.916023
Target:  5'- cGG-CCgCGAGCGCgCGGCCcguUGuuGUCu -3'
miRNA:   3'- -CCaGG-GCUUGCG-GCCGGu--ACuuUAGc -5'
6380 3' -53.9 NC_001847.1 + 72120 0.67 0.937432
Target:  5'- uGGUCCCGGccuucGCGCgCGGCgCGUGcug-Ca -3'
miRNA:   3'- -CCAGGGCU-----UGCG-GCCG-GUACuuuaGc -5'
6380 3' -53.9 NC_001847.1 + 72387 0.66 0.958786
Target:  5'- uGGUCCU-AGCGCCGGUgcUGGuguUCGu -3'
miRNA:   3'- -CCAGGGcUUGCGGCCGguACUuu-AGC- -5'
6380 3' -53.9 NC_001847.1 + 75388 0.68 0.890757
Target:  5'- cGG-CaCCGGACG-CGGCCAgcGAGUCGa -3'
miRNA:   3'- -CCaG-GGCUUGCgGCCGGUacUUUAGC- -5'
6380 3' -53.9 NC_001847.1 + 76239 0.66 0.965716
Target:  5'- cGUCCCG-AC-CCGacGCCAUGGAggCGc -3'
miRNA:   3'- cCAGGGCuUGcGGC--CGGUACUUuaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.