miRNA display CGI


Results 21 - 40 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6380 3' -53.9 NC_001847.1 + 105158 0.75 0.573767
Target:  5'- cGGcUCCCGccGCGCCGGCCcgGccgcGUCGg -3'
miRNA:   3'- -CC-AGGGCu-UGCGGCCGGuaCuu--UAGC- -5'
6380 3' -53.9 NC_001847.1 + 103747 0.66 0.946683
Target:  5'- cGGgaagCCCGAGC-CCGcGCCcgGGGA-CGa -3'
miRNA:   3'- -CCa---GGGCUUGcGGC-CGGuaCUUUaGC- -5'
6380 3' -53.9 NC_001847.1 + 103582 0.67 0.937432
Target:  5'- cGG-CCCGccgccggcGGCGCCGGCCucgucGUCGu -3'
miRNA:   3'- -CCaGGGC--------UUGCGGCCGGuacuuUAGC- -5'
6380 3' -53.9 NC_001847.1 + 102955 0.66 0.946683
Target:  5'- gGGcCUCGGGCcCCGGCCggGggGcCGg -3'
miRNA:   3'- -CCaGGGCUUGcGGCCGGuaCuuUaGC- -5'
6380 3' -53.9 NC_001847.1 + 102262 0.73 0.645794
Target:  5'- cGGccCCCGAGgccuCGCCGucggccGCCGUGAGGUCGa -3'
miRNA:   3'- -CCa-GGGCUU----GCGGC------CGGUACUUUAGC- -5'
6380 3' -53.9 NC_001847.1 + 100852 0.81 0.293475
Target:  5'- aGGgCCgGAGCGCCGGCCcgccgGggGUCGg -3'
miRNA:   3'- -CCaGGgCUUGCGGCCGGua---CuuUAGC- -5'
6380 3' -53.9 NC_001847.1 + 95941 0.66 0.962015
Target:  5'- cGGcgCCgGAACGCUGGCgggcgagCGUGAGcgCa -3'
miRNA:   3'- -CCa-GGgCUUGCGGCCG-------GUACUUuaGc -5'
6380 3' -53.9 NC_001847.1 + 95935 0.66 0.946683
Target:  5'- --gCUCGAA-GCUGGCCAUGAccAUCGc -3'
miRNA:   3'- ccaGGGCUUgCGGCCGGUACUu-UAGC- -5'
6380 3' -53.9 NC_001847.1 + 92783 0.67 0.932444
Target:  5'- --cCCCGAgGCGCUGGCCAccGAGGaCGu -3'
miRNA:   3'- ccaGGGCU-UGCGGCCGGUa-CUUUaGC- -5'
6380 3' -53.9 NC_001847.1 + 91762 0.69 0.851649
Target:  5'- cGGUCCgCGGgcgcuccgucggcgGCGCUGGCCGcGGAcgcuucGUCGg -3'
miRNA:   3'- -CCAGG-GCU--------------UGCGGCCGGUaCUU------UAGC- -5'
6380 3' -53.9 NC_001847.1 + 91747 0.71 0.794252
Target:  5'- cGcCCUGcgcGCGUCGGCCGUGaAGAUCGc -3'
miRNA:   3'- cCaGGGCu--UGCGGCCGGUAC-UUUAGC- -5'
6380 3' -53.9 NC_001847.1 + 91712 0.72 0.723242
Target:  5'- gGGUCgCG-ACGCCGGCCAgcagcagcagcgcGAGGUCc -3'
miRNA:   3'- -CCAGgGCuUGCGGCCGGUa------------CUUUAGc -5'
6380 3' -53.9 NC_001847.1 + 86990 0.66 0.954984
Target:  5'- cGGg-CCGGcgcGCGCCGGCCcgGcgGUUa -3'
miRNA:   3'- -CCagGGCU---UGCGGCCGGuaCuuUAGc -5'
6380 3' -53.9 NC_001847.1 + 86725 0.67 0.927213
Target:  5'- aGUaCCCGAGCGCCGGCgAcgc-GUCc -3'
miRNA:   3'- cCA-GGGCUUGCGGCCGgUacuuUAGc -5'
6380 3' -53.9 NC_001847.1 + 84362 0.66 0.954984
Target:  5'- uGGUCCCGAagACGCCGaGCgGgcuccgCGu -3'
miRNA:   3'- -CCAGGGCU--UGCGGC-CGgUacuuuaGC- -5'
6380 3' -53.9 NC_001847.1 + 84055 0.66 0.962362
Target:  5'- aGUCgCUaGAGCaGCCGGCCcgGGAAgcguuUCGg -3'
miRNA:   3'- cCAG-GG-CUUG-CGGCCGGuaCUUU-----AGC- -5'
6380 3' -53.9 NC_001847.1 + 82122 0.7 0.837857
Target:  5'- aGG-CCCGAGCGCgcagCGGCCGccGcuGUCGg -3'
miRNA:   3'- -CCaGGGCUUGCG----GCCGGUa-CuuUAGC- -5'
6380 3' -53.9 NC_001847.1 + 79212 0.67 0.92174
Target:  5'- uGGgCUCGcGACGCCGGCCGc-GGAUCa -3'
miRNA:   3'- -CCaGGGC-UUGCGGCCGGUacUUUAGc -5'
6380 3' -53.9 NC_001847.1 + 79092 0.66 0.950951
Target:  5'- uGUgCCCGuGCGCCGcGCCGUGccuGUgGa -3'
miRNA:   3'- cCA-GGGCuUGCGGC-CGGUACuu-UAgC- -5'
6380 3' -53.9 NC_001847.1 + 78781 0.67 0.932444
Target:  5'- cGGcUCCUugaGGCGCCGGCcCGUGGccauGUCGc -3'
miRNA:   3'- -CC-AGGGc--UUGCGGCCG-GUACUu---UAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.