miRNA display CGI


Results 41 - 60 of 106 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6380 3' -53.9 NC_001847.1 + 78615 0.75 0.533371
Target:  5'- aGGUCgCCGAGagcgaGCgGGCCGUGAAG-CGg -3'
miRNA:   3'- -CCAG-GGCUUg----CGgCCGGUACUUUaGC- -5'
6380 3' -53.9 NC_001847.1 + 78337 0.68 0.903865
Target:  5'- --cCCCaGGcGCGCCGGCCccGUGAGcgCGa -3'
miRNA:   3'- ccaGGG-CU-UGCGGCCGG--UACUUuaGC- -5'
6380 3' -53.9 NC_001847.1 + 78059 0.73 0.676655
Target:  5'- cGGUCCagCGcAGCGCUGGCCGccgcgcUGggGUUGa -3'
miRNA:   3'- -CCAGG--GC-UUGCGGCCGGU------ACuuUAGC- -5'
6380 3' -53.9 NC_001847.1 + 77487 0.71 0.766236
Target:  5'- cGG-CCCGGccCGCCGGCCc--GAGUCGg -3'
miRNA:   3'- -CCaGGGCUu-GCGGCCGGuacUUUAGC- -5'
6380 3' -53.9 NC_001847.1 + 77041 0.67 0.937432
Target:  5'- --cCCCG-ACGUCGGCCAUcGGAAg-- -3'
miRNA:   3'- ccaGGGCuUGCGGCCGGUA-CUUUagc -5'
6380 3' -53.9 NC_001847.1 + 76573 0.66 0.954984
Target:  5'- cGG-CCCGcuuaGCUGGCCGgcAAGUCGa -3'
miRNA:   3'- -CCaGGGCuug-CGGCCGGUacUUUAGC- -5'
6380 3' -53.9 NC_001847.1 + 76239 0.66 0.965716
Target:  5'- cGUCCCG-AC-CCGacGCCAUGGAggCGc -3'
miRNA:   3'- cCAGGGCuUGcGGC--CGGUACUUuaGC- -5'
6380 3' -53.9 NC_001847.1 + 75388 0.68 0.890757
Target:  5'- cGG-CaCCGGACG-CGGCCAgcGAGUCGa -3'
miRNA:   3'- -CCaG-GGCUUGCgGCCGGUacUUUAGC- -5'
6380 3' -53.9 NC_001847.1 + 72387 0.66 0.958786
Target:  5'- uGGUCCU-AGCGCCGGUgcUGGuguUCGu -3'
miRNA:   3'- -CCAGGGcUUGCGGCCGguACUuu-AGC- -5'
6380 3' -53.9 NC_001847.1 + 72120 0.67 0.937432
Target:  5'- uGGUCCCGGccuucGCGCgCGGCgCGUGcug-Ca -3'
miRNA:   3'- -CCAGGGCU-----UGCG-GCCG-GUACuuuaGc -5'
6380 3' -53.9 NC_001847.1 + 71874 0.68 0.916023
Target:  5'- cGG-CCgCGAGCGCgCGGCCcguUGuuGUCu -3'
miRNA:   3'- -CCaGG-GCUUGCG-GCCGGu--ACuuUAGc -5'
6380 3' -53.9 NC_001847.1 + 70694 0.67 0.927213
Target:  5'- cGGgCCCGGG-GCUGGCCGUGGc---- -3'
miRNA:   3'- -CCaGGGCUUgCGGCCGGUACUuuagc -5'
6380 3' -53.9 NC_001847.1 + 67519 0.66 0.954984
Target:  5'- cGGUCgCGGACG-CGGCCAacGAcAUCc -3'
miRNA:   3'- -CCAGgGCUUGCgGCCGGUa-CUuUAGc -5'
6380 3' -53.9 NC_001847.1 + 66342 0.67 0.927213
Target:  5'- uGGggCgCGGGCGCC-GCCGUGGcGAUCGu -3'
miRNA:   3'- -CCa-GgGCUUGCGGcCGGUACU-UUAGC- -5'
6380 3' -53.9 NC_001847.1 + 66171 0.66 0.946683
Target:  5'- -cUCCCGGgcugGCGCCGGCCGc------- -3'
miRNA:   3'- ccAGGGCU----UGCGGCCGGUacuuuagc -5'
6380 3' -53.9 NC_001847.1 + 64742 0.66 0.962362
Target:  5'- -aUUCCGGACaccCCGGCCGUacAGUCGc -3'
miRNA:   3'- ccAGGGCUUGc--GGCCGGUAcuUUAGC- -5'
6380 3' -53.9 NC_001847.1 + 62778 0.67 0.927213
Target:  5'- ---aCCGAgguGCGCuCGGCCAUGuuGGUCa -3'
miRNA:   3'- ccagGGCU---UGCG-GCCGGUACu-UUAGc -5'
6380 3' -53.9 NC_001847.1 + 59982 0.67 0.937432
Target:  5'- uGGUCCCGAcGCGgCGGCCu-------- -3'
miRNA:   3'- -CCAGGGCU-UGCgGCCGGuacuuuagc -5'
6380 3' -53.9 NC_001847.1 + 58753 0.69 0.876724
Target:  5'- cGGcCCCcGGCGCCccccccgaGGCCGUGAAGaggCGa -3'
miRNA:   3'- -CCaGGGcUUGCGG--------CCGGUACUUUa--GC- -5'
6380 3' -53.9 NC_001847.1 + 58746 0.67 0.942177
Target:  5'- cGG-CCCGAcagcgGCGgCGGCCGcGAcGGUCGc -3'
miRNA:   3'- -CCaGGGCU-----UGCgGCCGGUaCU-UUAGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.